Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq96370 159 7e-37 seq105328 131 4e-28 seq31885 131 4e-28 seq121365 127 4e-27 seq43282 122 2e-25 seq75140 80.6 6e-13 seq102520 78.8 2e-12 >seq96370 Length=3044 Score = 159 bits (176), Expect = 7e-37 Identities = 124/148 (84%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 47 TCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 106 |||||||||| ||||||| || || |||||||||||||| || ||||||||| ||||| Sbjct 983 TCAGGCTTTCACCCATTGCGGAAAATACCCCACTGCTGCCTTCCATAGGAGTCTAGACCG 924 Query 107 TGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGT 166 || |||| | | |||||| ||||||||||||| |||||| ||| ||| || ||||||| Sbjct 923 TGCCTCAATCCTAGTGTGGCTGATCATCCTCTTGGACCAGCTACTAATCATCACCTTGGT 864 Query 167 GAGCCATTACCTCACCAACTAGCTAATC 194 ||| ||| ||||||||||||||||||| Sbjct 863 AAGCTATTGCCTCACCAACTAGCTAATC 836 >seq105328 Length=1171 Score = 131 bits (144), Expect = 4e-28 Identities = 119/149 (80%), Gaps = 1/149 (1%) Strand=Plus/Minus Query 47 TCAGGCTTTCGCCCATTGTCCAATATTCCCCACTG-CTGCCTCCCGTAGGAGTCTGGACC 105 ||| ||||| ||||||||| || ||||||||| ||||||| ||| |||||| | | Sbjct 191 TCAAGCTTTTGCCCATTGTGGAAAGTTCCCCACTAACTGCCTCTTGTAAGAGTCTAGGCT 132 Query 106 GTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGG 165 || ||||||| | |||||| |||||||||||| |||||| ||| |||| || ||||| Sbjct 131 GTATCTCAGTCCTAGTGTGGTTGATCATCCTCTTGGACCAGCTACTGATCATCATCTTGG 72 Query 166 TGAGCCATTACCTCACCAACTAGCTAATC 194 | ||| ||| ||| ||||||||||||||| Sbjct 71 TAAGCTATTGCCTTACCAACTAGCTAATC 43 >seq31885 Length=14054 Score = 131 bits (144), Expect = 4e-28 Identities = 119/149 (80%), Gaps = 1/149 (1%) Strand=Plus/Minus Query 47 TCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCT-GCCTCCCGTAGGAGTCTGGACC 105 ||| ||||| ||||||||| || |||||||||| | ||||| ||| |||| ||| | Sbjct 3860 TCAAGCTTTTGCCCATTGTGGAAAATTCCCCACTAATTGCCTCTTGTAAGAGTTTGGGCT 3801 Query 106 GTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGG 165 || ||||||| | |||||| |||||||||||| |||||| ||| ||| ||| ||||| Sbjct 3800 GTATCTCAGTCCTAGTGTGGTTGATCATCCTCTTGGACCAGCTACTGATAATCGTCTTGG 3741 Query 166 TGAGCCATTACCTCACCAACTAGCTAATC 194 | ||| ||| |||||||||||||||||| Sbjct 3740 TAAGCTATTGTCTCACCAACTAGCTAATC 3712 >seq121365 Length=4986 Score = 127 bits (140), Expect = 4e-27 Identities = 116/148 (78%), Gaps = 9/148 (6%) Strand=Plus/Plus Query 47 TCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 106 |||||||||| ||||||| || |||||||||| ||||||||||||||||||| | || Sbjct 1968 TCAGGCTTTCACCCATTGCGGAAAATTCCCCACTACTGCCTCCCGTAGGAGTCTAGGTCG 2027 Query 107 TGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGT 166 || |||| | |||||| ||||| |||||| ||| |||| |||| ||||| Sbjct 2028 TGCCTCAATCTTAGTGTG---------GCTCTCGGACCAGCTACTGATCATCGCGTTGGT 2078 Query 167 GAGCCATTACCTCACCAACTAGCTAATC 194 ||| ||| ||||||||||||||||||| Sbjct 2079 AAGCTATTGCCTCACCAACTAGCTAATC 2106 >seq43282 Length=2664 Score = 122 bits (134), Expect = 2e-25 Identities = 124/162 (77%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 57 GCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTT 116 ||||||||||||| |||||||||||||||| ||||| ||||| | | || ||||||| Sbjct 2063 GCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGAGAGTCCAGGCTGTTTCTCAGTC 2004 Query 117 CCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTAC 176 ||| |||| | ||||||| || |||| || | ||| | | |||||| |||| || | Sbjct 2003 CCATTGTGGCGGATCATCTGAAAAGGCCAGCTAAGCATCATTGGCTTGGTCAGCCTTTGC 1944 Query 177 CTCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218 || | |||||| ||||| | || ||||||||| | ||||| Sbjct 1943 CTGATCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 1902 >seq75140 Length=7196 Score = 80.6 bits (88), Expect = 6e-13 Identities = 58/66 (88%), Gaps = 1/66 (2%) Strand=Plus/Plus Query 28 ACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCT 87 ||||||||||||| || ||||||||||||||||||| || |||||||||| |||||| Sbjct 7132 ACACGCGGCATTG-CTCCATCAGGCTTTCGCCCATTGCAGAAAATTCCCCACTACTGCCT 7190 Query 88 CCCGTA 93 |||||| Sbjct 7191 CCCGTA 7196 >seq102520 Length=4781 Score = 78.8 bits (86), Expect = 2e-12 Identities = 51/56 (91%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 80 TGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCC 135 ||||||| ||||| ||||||||| |||||||||||| |||||||| |||||||||| Sbjct 4781 TGCTGCCCCCCGTGGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCC 4726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1069062709280