Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq138279 174 4e-41 seq221503 136 1e-29 seq133955 134 3e-29 seq112647 125 2e-26 seq163405 111 4e-22 seq37916 107 5e-21 seq24780 93.3 1e-16 seq100106 89.7 1e-15 seq106386 87.8 4e-15 seq100114 84.2 5e-14 seq238853 77.0 8e-12 seq97334 73.4 1e-10 seq40801 73.4 1e-10 >seq138279 Length=1048 Score = 174 bits (192), Expect = 4e-41 Identities = 298/416 (72%), Gaps = 15/416 (4%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| | ||| | || |||||| |||||||| |||||| ||||| | Sbjct 538 CCACAACTCAT-CTGCTGA-TTCTTCAACATCAGTCGGTTTAAACCTCCACTTAGTT-TC 594 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || | || ||| ||||||||| ||| | ||| ||||| || | || Sbjct 595 ACCCAAGCTT-CATCTTGGTCAT-GGATAGATCACCCAGGTTT-GGGTCCATAAGC-AGT 650 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 || | | ||||| |||||||||||| | ||||| || | ||| |||| | Sbjct 651 AACAATTC-CCCTATGAAGACTCGCTTT-CACTACGGCTTTGGTGGGTTCCCTTAACCAA 708 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA--A 244 |||||| || |||||| | | |||| | ||| ||| |||| |||| | | | Sbjct 709 -GCCACTACCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGTCCTAGTA 767 Query 245 GTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGG 304 || ||||||||||||| || |||||||||| | ||||||||||||||| | ||| Sbjct 768 GTCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGG 826 Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 ||||||||| || |||||||||||||||| ||| |||| ||||| ||| |||||||||| Sbjct 827 GTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATGGGTCACCCAGGAGTATTTAGC 886 Query 365 CTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||| | | |||||| | ||||| || || | ||||| || | ||||||| Sbjct 887 CTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 942 >seq221503 Length=941 Score = 136 bits (150), Expect = 1e-29 Identities = 109/130 (84%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309 ||||||||||||| || |||||||||| | ||||||||||||||| | |||||||| Sbjct 37 CTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGGTTCT 95 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369 |||| || |||||||||||||||| ||| |||| ||||| ||| |||||||||||||| Sbjct 96 TTTCACCCTTCCCTCACGGTACTACTTCGCTATGGGTCACCCAGGAGTATTTAGCCTTGC 155 Query 370 AGGATGGTCC 379 | | |||||| Sbjct 156 AAGGTGGTCC 165 >seq133955 Length=1348 Score = 134 bits (148), Expect = 3e-29 Identities = 134/171 (78%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309 ||||||||||||| || |||||||||| | ||||||||||||||| | |||||||| Sbjct 663 CTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGGTTCT 605 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369 |||| || |||||||||||||||| ||| |||| ||||| ||| ||||||||||| || Sbjct 604 TTTCACCCTTCCCTCACGGTACTACTTCGCTATGGGTCACCCAGGAGTATTTAGCC-TGC 546 Query 370 AGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 | | |||||| | ||||| || || | ||||| || | ||||||| Sbjct 545 AAGGTGGTCCTAGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 495 >seq112647 Length=5682 Score = 125 bits (138), Expect = 2e-26 Identities = 98/116 (84%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309 ||||||||||||| || |||||||||| | ||||||||||||||| | |||||||| Sbjct 40 CTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGGTTCT 98 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCC 365 |||| || |||||||||||||||| ||| |||| ||||| ||| ||||||||||| Sbjct 99 TTTCACCCTTCCCTCACGGTACTACTTCGCTATGGGTCACCCAGGAGTATTTAGCC 154 >seq163405 Length=6639 Score = 111 bits (122), Expect = 4e-22 Identities = 128/171 (75%), Gaps = 1/171 (1%) Strand=Plus/Minus Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309 |||||||| |||| || |||||||||| | | ||||||||||||| | | ||||| Sbjct 4086 CTCCCACTACTTGGGAGCTTACGGTTTCATGTTTTATTTCACTCCCCGATG-GCAGTTCT 4028 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369 |||| || |||||||| ||||||| |||| ||| | ||| ||| |||||||||||||| Sbjct 4027 TTTCACCCTTCCCTCATGGTACTACTTCATTATGGATCACCCAGGAGTATTTAGCCTTGC 3968 Query 370 AGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 | | |||||| | ||||| | || | ||||| || | ||||||| Sbjct 3967 AAGGTGGTCCTTGCTGATTCACATGGGATTCCACGTGCCCCATGCTACTCG 3917 >seq37916 Length=2427 Score = 107 bits (118), Expect = 5e-21 Identities = 100/126 (79%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 252 CCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTT 311 |||| |||||| || || ||||||| ||||||||||||||| | |||||||||| Sbjct 412 CCCATTGCTTGGGAGCTTATGGTTTCATATTCTATTTCACTCCCCGATG-GGGGTTCTTT 354 Query 312 TCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAG 371 || || |||||||| ||||| | |||||||| ||||| | | |||||||||||||| | Sbjct 353 TCACCCTTCCCTCATGGTACCACTTCACTATTGGTCACCCGGGAGTATTTAGCCTTGCAA 294 Query 372 GATGGT 377 | |||| Sbjct 293 GGTGGT 288 >seq24780 Length=16514 Score = 93.3 bits (102), Expect = 1e-16 Identities = 100/130 (77%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||| |||| ||||| | | ||||| ||| ||| |||||| | |||||||||| Sbjct 8067 ACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCT-TAAATAGGGTTCTTTT 8009 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372 | |||||||||||||||||| || | ||||||||| | || | || |||| ||| |||| Sbjct 8008 CACCTTTCCCTCACGGTACTTGTACGTTATCGGTCATTGAGGAATACTTAGGCTTAGAGG 7949 Query 373 ATGGTCCCCC 382 ||||||||| Sbjct 7948 GTGGTCCCCC 7939 >seq100106 Length=6949 Score = 89.7 bits (98), Expect = 1e-15 Identities = 98/128 (77%), Gaps = 2/128 (2%) Strand=Plus/Plus Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309 ||||||||||||| || || |||||| | |||| |||||||| | |||||||| Sbjct 3795 CTCCCACTGCTTGGGAGCTTATAGTTTCATTCTTTATT-CACTCCCCGATA-GGGGTTCT 3852 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369 ||| || || ||||||||||| ||| |||| ||||| | | |||||||||||||| Sbjct 3853 TTTGACCATTTTCTCACGGTACTTCTTCGCTATAGGTCACTAAAGAGTATTTAGCCTTGC 3912 Query 370 AGGATGGT 377 | |||||| Sbjct 3913 AAGATGGT 3920 >seq106386 Length=4851 Score = 87.8 bits (96), Expect = 4e-15 Identities = 83/105 (79%), Gaps = 1/105 (1%) Strand=Plus/Minus Query 286 TTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGG 345 |||||||||| | |||||| | ||| || |||||||||||||||| ||| |||| || Sbjct 4622 TTTCACTCCCTGATG-GGGGTTTTGTTCACCCTTCCCTCACGGTACTACTTCGCTATAGG 4564 Query 346 TCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCA 390 ||| ||| |||||||||||||| | | |||||| || ||||| Sbjct 4563 TCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCAGATTCA 4519 >seq100114 Length=3493 Score = 84.2 bits (92), Expect = 5e-14 Identities = 96/127 (76%), Gaps = 3/127 (2%) Strand=Plus/Plus Query 250 CTCCCACT-GCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTC 308 |||||| | ||||| || ||| ||||| ||| ||||||||||| | |||||||| Sbjct 1963 CTCCCATTTGCTTGGGAGCTTACAATTTCATGATTTATTTCACTCC--TTGACGGGGTTC 2020 Query 309 TTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTG 368 |||| || ||| |||| ||||| | || ||||| ||| |||| |||||||||||| | Sbjct 2021 TTTTGACCCTTCTCTCATGGTACGACTTTACTATATATCACTCAGGAGTATTTAGCCTCG 2080 Query 369 GAGGATG 375 | |||| Sbjct 2081 CAAGATG 2087 >seq238853 Length=1129 Score = 77.0 bits (84), Expect = 8e-12 Identities = 65/80 (81%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 303 GGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTA 362 ||||||||| | |||||||||||||||| || | |||||||||| | || | || ||| Sbjct 1112 GGGTTCTTTCACCTTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTA 1053 Query 363 GCCTTGGAGGATGGTCCCCC 382 | ||| |||| ||||||||| Sbjct 1052 GGCTTAGAGGGTGGTCCCCC 1033 >seq97334 Length=1701 Score = 73.4 bits (80), Expect = 1e-10 Identities = 120/161 (75%), Gaps = 9/161 (6%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| | Sbjct 1399 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT-TTC 1343 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| | |||| ||| ||| ||||||||| ||| | |||| ||| | | ||| Sbjct 1342 ACCCAAGC-TTCATCCTAGTCAT-GGATAGATCACCCAG-GTTCGAGTCCA-TAAGCAGT 1287 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC 169 ||| | ||| || |||||||| ||||||||||| |||| Sbjct 1286 GAC-AATTGCCTTATGAAGACTCG-TTTTCGCTACGGCTCC 1248 >seq40801 Length=18076 Score = 73.4 bits (80), Expect = 1e-10 Identities = 118/167 (71%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 253 CCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTT 312 ||| ||||| || |||||||||| ||||||||||| | | ||| || |||| Sbjct 4502 CCAATGCTTTGGAGCTTACGGTTTCATATTCTATTTCACT-CTTTGATAGGGATTATTTT 4560 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372 | | ||||||||| |||||| ||| |||| | ||| | || || || |||||||| | | Sbjct 4561 CATCATTCCCTCACAGTACTACTTCGCTATGGATCACTTAGGAGAATCTAGCCTTGCAAG 4620 Query 373 ATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 || ||| | ||||| ||| |||| | |||| | | |||||| Sbjct 4621 GTGATCCTTACTAATTCACACAGGATTTCACATGCT-CATACTACTC 4666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1238198003584