Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq96370 170 4e-40 seq121365 138 2e-30 seq31885 116 7e-24 seq43282 93.3 8e-17 seq115642 75.2 2e-11 seq102520 75.2 2e-11 seq121024 73.4 8e-11 >seq96370 Length=3044 Score = 170 bits (188), Expect = 4e-40 Identities = 215/293 (73%), Gaps = 18/293 (6%) Strand=Plus/Minus Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72 ||||| |||| ||||||| | || || |||||||||||||| || ||||||||| | ||| Sbjct 983 TCAGGCTTTCACCCATTGCGGAAAATACCCCACTGCTGCCTTCCATAGGAGTCTAGACCG 924 Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132 || |||| ||| | |||||| | ||| ||||| | || ||||| ||| || |||||| Sbjct 923 TGCCTCAATCCTAGTGTGGCTGATCATCCTCTTGGACCAGCTACTAATCATCACCTTGGT 864 Query 133 GGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGC-GATAAATCT 191 |||||| ||||||||||| |||||| ||||||||| || || || ||| || Sbjct 863 AAGCTATTGCCTCACCAACTAGCTAATCAATCGCGAGCCCCTCCTTGGGCGGATTCCTCC 804 Query 192 TTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTCCAAACG 251 || ||| ||||| | || | ||||||||| |||||||||| | Sbjct 803 TT------------TTGC--TCCTC--AACCTACGGGGTATTAGCAATCGTTTCCAACTG 760 Query 252 TTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACT 304 || |||| ||| || |||||||| || || ||||||||||||||||||||| Sbjct 759 TTGTTCCCCTCCCAAGGGCAGGTT-CTTACACGTTACTCACCCGTCCGCCACT 708 >seq121365 Length=4986 Score = 138 bits (152), Expect = 2e-30 Identities = 207/293 (71%), Gaps = 27/293 (9%) Strand=Plus/Plus Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72 ||||| |||| ||||||| | || || ||||||| ||||||||||||||||||| || || Sbjct 1968 TCAGGCTTTCACCCATTGCGGAAAATTCCCCACTACTGCCTCCCGTAGGAGTCTAGGTCG 2027 Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132 || |||| || | ||||| ||||| | || ||||| |||| ||| ||||| Sbjct 2028 TGCCTCAATCTTAGTGTGG---------CTCTCGGACCAGCTACTGATCATCGCGTTGGT 2078 Query 133 GGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGC-GATAAATCT 191 |||||| ||||||||||| |||||| | | |||||| || || || ||| ||| Sbjct 2079 AAGCTATTGCCTCACCAACTAGCTAATCAGTCACGAGCCACTCCTTGGGCAGATTCCTCT 2138 Query 192 TTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTCCAAACG 251 || ||| ||||| | || | ||||||||| | ||||||| | Sbjct 2139 TT------------TTGC--TCCTC--AACCTACGGGGTATTAGCAGCCATTTCCAACTG 2182 Query 252 TTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACT 304 || || | ||| || ||| |||| || || ||||||||||||||||||||| Sbjct 2183 TTGTTACCCTCCCAAGGGCTGGTT-CTTACACGTTACTCACCCGTCCGCCACT 2234 >seq31885 Length=14054 Score = 116 bits (128), Expect = 7e-24 Identities = 123/161 (76%), Gaps = 1/161 (1%) Strand=Plus/Minus Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCT-GCCTCCCGTAGGAGTCTGGGCC 71 ||| | ||| ||||||||| || || ||||||| | ||||| ||| |||| ||||| Sbjct 3860 TCAAGCTTTTGCCCATTGTGGAAAATTCCCCACTAATTGCCTCTTGTAAGAGTTTGGGCT 3801 Query 72 GTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGG 131 || ||||||||| | ||||| | ||| ||||| | || ||||| ||| ||| ||||| Sbjct 3800 GTATCTCAGTCCTAGTGTGGTTGATCATCCTCTTGGACCAGCTACTGATAATCGTCTTGG 3741 Query 132 TGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCC 172 | |||||| |||||||||||| |||||| | ||||||| Sbjct 3740 TAAGCTATTGTCTCACCAACTAGCTAATCAAACTCGAGCCC 3700 >seq43282 Length=2664 Score = 93.3 bits (102), Expect = 8e-17 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 24 CCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCC 83 |||||||| ||| || ||||||||||||| ||||| ||||| ||| || ||||||||| Sbjct 2062 CCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGAGAGTCCAGGCTGTTTCTCAGTCC 2003 Query 84 CAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATC 143 || |||||| | ||| | || || |||| ||| | |||||||| || || | Sbjct 2002 CATTGTGGCGGATCATCTGAAAAGGCCAGCTAAGCATCATTGGCTTGGTCAGCCTTTGCC 1943 Query 144 TCACCAACTACCTAAT 159 | | |||||||||||| Sbjct 1942 TGATCAACTACCTAAT 1927 >seq115642 Length=7596 Score = 75.2 bits (82), Expect = 2e-11 Identities = 64/78 (82%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 228 GGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTA 287 ||||||||| |||||||| ||| |||| |||| || | |||||| || ||| |||| Sbjct 5261 GGTATTAGCAACCGTTTCCAGCTGTTGTTCCCCTCTCAAGGACAGGTT-CTTACGCGTTA 5319 Query 288 CTCACCCGTCCGCCACTA 305 |||||||||||||||||| Sbjct 5320 CTCACCCGTCCGCCACTA 5337 >seq102520 Length=4781 Score = 75.2 bits (82), Expect = 2e-11 Identities = 50/56 (89%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 46 TGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACC 101 ||||||| ||||| |||||||||||||||||||||||||| |||||| | ||| || Sbjct 4781 TGCTGCCCCCCGTGGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCC 4726 >seq121024 Length=45741 Score = 73.4 bits (80), Expect = 8e-11 Identities = 63/77 (82%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 228 GGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTA 287 ||||||||| |||||||| ||| |||| ||| || |||||||| || ||| |||| Sbjct 42031 GGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTA 41973 Query 288 CTCACCCGTCCGCCACT 304 ||||||||||||||||| Sbjct 41972 CTCACCCGTCCGCCACT 41956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 995664374016