Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq96370 179 9e-43 seq121365 134 3e-29 seq105328 114 3e-23 seq31885 114 3e-23 seq115642 89.7 1e-15 seq43282 89.7 1e-15 seq75140 82.4 2e-13 seq102520 80.6 6e-13 >seq96370 Length=3044 Score = 179 bits (198), Expect = 9e-43 Identities = 264/367 (72%), Gaps = 30/367 (8%) Strand=Plus/Minus Query 48 TCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 107 |||||||| | ||||||| | || || |||||||||||||| || ||||||||| ||||| Sbjct 983 TCAGGCTTTCACCCATTGCGGAAAATACCCCACTGCTGCCTTCCATAGGAGTCTAGACCG 924 Query 108 TGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGT 167 || |||| | | |||||||||| ||||||||| ||||||||| ||| || ||| ||| Sbjct 923 TGCCTCAATCCTAGTGTGGCTGATCATCCTCTTGGACCAGCTACTAATCATCACCTTGGT 864 Query 168 GGGCCATTACCCCGCCAACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCG 227 || ||| || | ||||||||||||| | ||| | | || | | || | | Sbjct 863 AAGCTATTGCCTCACCAACTAGCTAAT-CAATCGCG----AGCCCCTCCT---TGGGCGG 812 Query 228 AAGGTCCCCCTCTTTGGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTA 287 | ||| ||| |||| || | | || || | ||||||||| | |||||||| ||| Sbjct 811 A--TTCCTCCT-TTTGCTCCT-CAAC-CTACGGGGTATTAGCAATCGTTTCCAACTGTTG 757 Query 288 TCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAG 347 | ||||||| ||||| ||| | || |||||||||||||||||||| ||| Sbjct 756 TTCCCCTCCCAAGGGCAGGTTCTTACACGTTACTCACCCGTCCGCCACT------GGAAA 703 Query 348 CAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCA 407 || || |||| |||| |||||| ||||||||| || |||||||||| |||| Sbjct 702 CACCA-----CTTC------CCGTCCGACTTCCATGTGTTAAGCATGCCGCCAGCATTCA 654 Query 408 ATCTGAG 414 ||||| Sbjct 653 TCCTGAG 647 >seq121365 Length=4986 Score = 134 bits (148), Expect = 3e-29 Identities = 249/361 (69%), Gaps = 41/361 (11%) Strand=Plus/Plus Query 48 TCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 107 |||||||| | ||||||| | || |||||||||| ||||||||||||||||||| | || Sbjct 1968 TCAGGCTTTCACCCATTGCGGAAAATTCCCCACTACTGCCTCCCGTAGGAGTCTAGGTCG 2027 Query 108 TGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGT 167 || |||| | ||||||| ||||| ||||||||| |||| |||| | ||| Sbjct 2028 TGCCTCAATCTTAGTGTGG---------CTCTCGGACCAGCTACTGATCATCGCGTTGGT 2078 Query 168 GGGCCATTACCCCGCCAACTAGCTAATCCCATCTGGGTTCA-TCCGATAGTGAGAGGCCC 226 || ||| || | ||||||||||||| | || | || ||| | | ||| Sbjct 2079 AAGCTATTGCCTCACCAACTAGCTAAT-CAGTCACGAGCCACTCC--TTG-----GGC-- 2128 Query 227 GAAGGTCCCCCTCTTTGGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTT 286 || | || || |||| || | | || || | ||||||||| || |||||| ||| Sbjct 2129 --AGATTCCTCTTTTTGCTCCT-CAAC-CTACGGGGTATTAGCAGCCATTTCCAACTGTT 2184 Query 287 ATCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAA 346 | |||||| ||| | ||| | || |||||||||||||||||||| ||| Sbjct 2185 GTTACCCTCCCAAGGGCTGGTTCTTACACGTTACTCACCCGTCCGCCACT------GGAA 2238 Query 347 GCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTC 406 || || |||| |||| ||||||||||||||| || |||||||||| ||| Sbjct 2239 ACACCA-----CTTC------CCGTCTGACTTGCATGTGTTAAGCATGCCGCCAGCATTC 2287 Query 407 A 407 | Sbjct 2288 A 2288 >seq105328 Length=1171 Score = 114 bits (126), Expect = 3e-23 Identities = 133/178 (75%), Gaps = 1/178 (1%) Strand=Plus/Minus Query 19 GCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCC 78 || |||| | | ||| ||||| | | ||| |||| |||||||||| || |||||| Sbjct 220 GCTTTCTACCTCAACGTGGCATTAATTCGTCAAGCTTTTGCCCATTGTGGAAAGTTCCCC 161 Query 79 ACTG-CTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCT 137 ||| ||||||| ||| |||||| | | || ||||||| | ||||||| || ||||||| Sbjct 160 ACTAACTGCCTCTTGTAAGAGTCTAGGCTGTATCTCAGTCCTAGTGTGGTTGATCATCCT 101 Query 138 CTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195 || ||||||||| |||| || || ||| || ||| || |||||||||||||| Sbjct 100 CTTGGACCAGCTACTGATCATCATCTTGGTAAGCTATTGCCTTACCAACTAGCTAATC 43 >seq31885 Length=14054 Score = 114 bits (126), Expect = 3e-23 Identities = 133/178 (75%), Gaps = 1/178 (1%) Strand=Plus/Minus Query 19 GCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCC 78 || |||| | | ||| ||||| | | ||| |||| |||||||||| || ||||||| Sbjct 3889 GCTTTCTACCTCAACGTGGCATTAATTCGTCAAGCTTTTGCCCATTGTGGAAAATTCCCC 3830 Query 79 ACTGCT-GCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCT 137 ||| | ||||| ||| |||| ||| | || ||||||| | ||||||| || ||||||| Sbjct 3829 ACTAATTGCCTCTTGTAAGAGTTTGGGCTGTATCTCAGTCCTAGTGTGGTTGATCATCCT 3770 Query 138 CTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195 || ||||||||| ||| ||| || ||| || ||| | | |||||||||||||| Sbjct 3769 CTTGGACCAGCTACTGATAATCGTCTTGGTAAGCTATTGTCTCACCAACTAGCTAATC 3712 >seq115642 Length=7596 Score = 89.7 bits (98), Expect = 1e-15 Identities = 114/156 (73%), Gaps = 21/156 (13%) Strand=Plus/Plus Query 261 GGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCA--GGCAGTTTCCCAGACATT 318 ||||||||| ||||||||||| ||| | |||||| ||| | ||| ||| | | || Sbjct 5261 GGTATTAGCAACCGTTTCCAGCTGTTGTTCCCCTC--TCAAGGACAGGTTCTTACGCGTT 5318 Query 319 ACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTT 378 |||||||||||||||||| ||| || || |||| |||| |||||| Sbjct 5319 ACTCACCCGTCCGCCACT------AGAAACACCA-----CTTC------CCGTCCGACTT 5361 Query 379 GCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||||||||| || |||| |||||||||| ||||| Sbjct 5362 GCATGTGTTAAGCATGCCACCAGCGTTCATCCTGAG 5397 >seq43282 Length=2664 Score = 89.7 bits (98), Expect = 1e-15 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 58 GCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTT 117 ||||||||| ||| |||||||||||||||| ||||| ||||| | | || ||||||| Sbjct 2063 GCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGAGAGTCCAGGCTGTTTCTCAGTC 2004 Query 118 CCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTAC 177 ||| |||||| | ||||| || ||||||| | ||| | | || ||| ||| || | Sbjct 2003 CCATTGTGGCGGATCATCTGAAAAGGCCAGCTAAGCATCATTGGCTTGGTCAGCCTTTGC 1944 Query 178 CCCGCCAACTAGCTAAT 194 | |||||| ||||| Sbjct 1943 CTGATCAACTACCTAAT 1927 >seq75140 Length=7196 Score = 82.4 bits (90), Expect = 2e-13 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 30 ACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTC 89 ||||||||||| ||| |||||||||| ||||||||| || |||||||||| ||||||| Sbjct 7132 ACACGCGGCATTGCTCCATCAGGCTTTCGCCCATTGCAGAAAATTCCCCACTACTGCCTC 7191 Query 90 CCGTA 94 ||||| Sbjct 7192 CCGTA 7196 >seq102520 Length=4781 Score = 80.6 bits (88), Expect = 6e-13 Identities = 59/69 (86%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 81 TGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTC 140 ||||||| ||||| ||||||||| |||||||||||| |||||||||||| |||||| Sbjct 4781 TGCTGCCCCCCGTGGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAA 4722 Query 141 AGACCAGCT 149 |||| |||| Sbjct 4721 AGACTAGCT 4713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1219050611776