Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq96370 140 1e-30 seq105328 131 5e-28 seq31885 131 5e-28 seq121365 116 1e-23 seq12517 113 1e-22 seq118813 109 2e-21 seq43282 95.1 4e-17 seq109372 91.5 4e-16 seq229925 89.7 2e-15 seq111809 89.7 2e-15 seq75140 80.6 8e-13 >seq96370 Length=3044 Score = 140 bits (154), Expect = 1e-30 Identities = 124/155 (80%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||| |||||||||||||||| ||| || ||||||||||| || ||| |||||| | Sbjct 829 CGCGATTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGTGATGATTAGTAGCTGGT 888 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | ||||| ||||| |||||| | | | |||| ||||||| | ||||||| || |||||| Sbjct 889 CCAAGAGGATGATCAGCCACACTAGGATTGAGGCACGGTCTAGACTCCTATGGAAGGCAG 948 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGA 314 |||||||| || || | ||||||| ||||||||| Sbjct 949 CAGTGGGGTATTTTCCGCAATGGGTGAAAGCCTGA 983 >seq105328 Length=1171 Score = 131 bits (144), Expect = 5e-28 Identities = 133/172 (77%), Gaps = 1/172 (1%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 || || |||||||||||||||||||| || |||||||||| || |||||||||| | Sbjct 36 CGAGTTTGATTAGCTAGTTGGTAAGGCAATAGCTTACCAAGATGATGATCAGTAGCTGGT 95 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | ||||| ||||| ||||| | | ||||||| || | | | |||| ||| ||||||| Sbjct 96 CCAAGAGGATGATCAACCACACTAGGACTGAGATACAGCCTAGACTCTTACAAGAGGCAG 155 Query 280 -CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGT 330 ||||||||| || |||||||||||||||| ||| | | || ||| ||| Sbjct 156 TTAGTGGGGAACTTTCCACAATGGGCAAAAGCTTGACGAATTAATGCCACGT 207 >seq31885 Length=14054 Score = 131 bits (144), Expect = 5e-28 Identities = 133/172 (77%), Gaps = 1/172 (1%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 || || |||||||||||||||| || || |||||||||| ||| ||||||||| | Sbjct 3705 CGAGTTTGATTAGCTAGTTGGTGAGACAATAGCTTACCAAGACGATTATCAGTAGCTGGT 3764 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGC-A 278 | ||||| ||||| ||||| | | ||||||| || | |||||||| ||| ||||| | Sbjct 3765 CCAAGAGGATGATCAACCACACTAGGACTGAGATACAGCCCAAACTCTTACAAGAGGCAA 3824 Query 279 GCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGT 330 |||||||||| || |||||||||||||||| ||| | | || ||| ||| Sbjct 3825 TTAGTGGGGAATTTTCCACAATGGGCAAAAGCTTGACGAATTAATGCCACGT 3876 >seq121365 Length=4986 Score = 116 bits (128), Expect = 1e-23 Identities = 115/150 (77%), Gaps = 9/150 (6%) Strand=Plus/Minus Query 165 CTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAG 224 ||||||||||||||||| ||| || ||||||||| |||| |||||||||| | | ||| Sbjct 2108 CTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAACGCGATGATCAGTAGCTGGTCCGAG 2049 Query 225 AGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTG 284 || ||||| | | |||| |||| | | ||||||||||||||||| |||| Sbjct 2048 AG---------CCACACTAAGATTGAGGCACGACCTAGACTCCTACGGGAGGCAGTAGTG 1998 Query 285 GGGAATATTGCACAATGGGCAAAAGCCTGA 314 |||||| || | ||||||| ||||||||| Sbjct 1997 GGGAATTTTCCGCAATGGGTGAAAGCCTGA 1968 >seq12517 Length=7441 Score = 113 bits (124), Expect = 1e-22 Identities = 179/250 (72%), Gaps = 10/250 (4%) Strand=Plus/Plus Query 226 GGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGG 285 || |||| |||| || ||| | ||| |||| | ||| ||||| || ||| |||||||| Sbjct 6024 GGATGATTGGCCGCACTGGGATTGAAACACTGCCCAGACTCCC-CGAGAGT-AGCAGTGG 6081 Query 286 GGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC- 344 |||| ||| | ||||||||||||| |||| |||||| || |||| || ||||| | Sbjct 6082 AGAATCTTGGATAATGGGCAAAAGCTTGATCCAGCAATATTGCATGAGTGAAGAAGGTCA 6141 Query 345 --TTCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAG 400 ||| || ||||||||| | || | | ||| |||| | ||| |||| ||| Sbjct 6142 ATGTCGCTTC-TAAAGCTCTTTTGTCGAGTGTGTGATCATGATAGAACTCAAGGAAGAAA 6200 Query 401 CCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGG--GGCTAGCGTTATCCGG 458 ||| |||||||| ||||||||| | || | || | | |||| ||| || ||| | || Sbjct 6201 CCCTGGCTAACTCTGTGCCAGCAACGGCAGGAAGATGAAGGGGAGGCAAGTGTTCTTTGG 6260 Query 459 AATTACTGGG 468 ||| |||||| Sbjct 6261 AATAACTGGG 6270 >seq118813 Length=4687 Score = 109 bits (120), Expect = 2e-21 Identities = 215/311 (69%), Gaps = 13/311 (4%) Strand=Plus/Minus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| || ||||| | |||| || | || ||| | | || ||| | || || Sbjct 888 ATTAGGTAATTGGTCAAGTAAAGGTTGACTAAGCCAATGAAGCTTAGTTGGTCTTTTGGG 829 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 |||| |||| |||||| | ||| |||| | ||| ||||| || ||| |||||||| | Sbjct 828 ATGATTGGCCGCATTGGGATTGAAACACTGCCCAGACTCCC-CGAGAGT-AGCAGTGGAG 771 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGC---AACGCCGCGTGAGCGATGAAGGCC 344 ||| ||| | ||||||||||||| |||| |||| || || |||| || ||||| | Sbjct 770 AATCTTGGATAATGGGCAAAAGCTTGATCCAGCAAAAATATTGCATGAGTGAAGAAGGGC 711 Query 345 ---TTCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAA 399 ||| || ||||||||| | || | | ||| |||| | ||| |||| ||| Sbjct 710 AATGTCGCTTC-TAAAGCTCTTTTGTCGAGTGTGTGATCATGATAGAACTCAAGGAAGAA 652 Query 400 GCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGG--GGCTAGCGTTATCCG 457 ||| |||||||| |||||||||| | || | || | | ||| ||| || ||| | | Sbjct 651 ACCCTGGCTAACTCCGTGCCAGCAACGGCAGGAAGATGAGGGGGAGGCAAGTGTTCTTTG 592 Query 458 GAATTACTGGG 468 |||| |||||| Sbjct 591 GAATAACTGGG 581 >seq43282 Length=2664 Score = 95.1 bits (104), Expect = 4e-17 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| |||||| | ||| || |||| |||||| | | ||| |||| | ||| | Sbjct 1927 ATTAGGTAGTTGATCAGGCAAAGGCTGACCAAGCCAATGATGCTTAGCTGGCCTTTTCAG 1986 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||||| |||||| ||| ||||||| || | | |||| ||||| ||||||||||||| Sbjct 1987 ATGATCCGCCACAATGGGACTGAGAAACAGCCTGGACTCTCACGGGGGGCAGCAGTGGGG 2046 Query 288 AATATTGCACAATGGGC 304 ||| ||| ||||||||| Sbjct 2047 AATCTTGGACAATGGGC 2063 >seq109372 Length=11164 Score = 91.5 bits (100), Expect = 4e-16 Identities = 82/102 (80%), Gaps = 1/102 (1%) Strand=Plus/Minus Query 378 AATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACG 437 |||||||||| || ||| |||| |||||||| |||||||||||||| ||||||| Sbjct 2014 AATGACGGTATCTGGGGAATAAGCATTGGCTAACTCTGTGCCAGCAGCCGCAGTAATACA 1955 Query 438 TAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGT 479 ||| || ||||||||||||||| | | |||||||||| || Sbjct 1954 GAGGATGCAAGCGTTATCCGGAATGA-TTGGGCGTAAAGCGT 1914 >seq229925 Length=675 Score = 89.7 bits (98), Expect = 2e-15 Identities = 89/113 (79%), Gaps = 3/113 (3%) Strand=Plus/Minus Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 |||| ||| ||||| ||||||||| | |||||||| ||||||||||||| ||||||| Sbjct 524 CTGAAAGGATGATCAACCACATTGGGATTGAGACACAGTCCAAACTCCTAGAAGAGGCAG 465 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAG-CAACGCCGCGTG 331 || ||||||| || |||||| ||||| ||| | ||| ||| ||||| || Sbjct 464 CAACGGGGAATTTTCTGCAATGGCCAAAATCCTAA--CAGACAATGCCGCATG 414 >seq111809 Length=12013 Score = 89.7 bits (98), Expect = 2e-15 Identities = 72/86 (84%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 415 GTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAA 474 |||||||||||||||||||||| ||| || ||||||||||||||| | | |||||||| Sbjct 9943 GTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGCGTTATCCGGAATGA-TTGGGCGTAA 10001 Query 475 AGGGTGCGTAGGTGGTTTCTTAAGTC 500 || || |||||||| || |||||| Sbjct 10002 AGCGTCTGTAGGTGGCTTTGTAAGTC 10027 >seq75140 Length=7196 Score = 80.6 bits (88), Expect = 8e-13 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 268 TACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCG 327 |||||||||||| |||||||||| || |||||||| ||||||||||| ||||| |||| Sbjct 7196 TACGGGAGGCAGTAGTGGGGAATTTTCTGCAATGGGCGAAAGCCTGATGGAGCAATGCCG 7137 Query 328 CGTG 331 |||| Sbjct 7136 CGTG 7133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1493496561024