Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq133955 132 9e-29 seq163405 91.5 3e-16 seq181524 86.0 1e-14 seq238853 80.6 5e-13 seq238852 80.6 5e-13 seq112989 75.2 2e-11 >seq133955 Length=1348 Score = 132 bits (146), Expect = 9e-29 Identities = 178/243 (73%), Gaps = 11/243 (5%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| |||| Sbjct 136 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 195 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| |||||| || |||| ||| | Sbjct 196 GAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCGAA 248 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| ||| Sbjct 249 C--TGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 305 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 306 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 365 Query 249 CCT 251 ||| Sbjct 366 CCT 368 >seq163405 Length=6639 Score = 91.5 bits (100), Expect = 3e-16 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| ||||||| ||||||||||| ||| | |||||| |||||| Sbjct 3708 GCGAACTGAAACATCTTAGTAGCTAGAGGAAAAGAAAGCAAAAGTGATTCCTGTAGTAGT 3767 Query 229 GGCGAGCGAAATGGGATGAGCCT 251 ||| |||||||||||| ||||| Sbjct 3768 GGCAAGCGAAATGGGAGCAGCCT 3790 >seq181524 Length=1858 Score = 86.0 bits (94), Expect = 1e-14 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 171 GAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGG 230 |||||||||||||| |||||| || |||||||| ||| | ||||||| ||||| || Sbjct 586 GAACTGAAACATCTTAGTAGCAAGAGAAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGG 527 Query 231 CGAGCGAAATGGGATGAGCCTT 252 |||||||||||||| |||||| Sbjct 526 CGAGCGAAATGGGAGCAGCCTT 505 >seq238853 Length=1129 Score = 80.6 bits (88), Expect = 5e-13 Identities = 64/77 (83%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| ||||||| ||||| |||||||||||||| ||| ||||| Sbjct 650 GCGAACTGAAACATCTGAGTAGCTAAAGGAAGGGAAATCAACCGAGACTCCGTTAGTAGC 709 Query 229 GGCGAGCGAAATGGGAT 245 ||||||||| | |||| Sbjct 710 GGCGAGCGAGAGCGGAT 726 >seq238852 Length=2997 Score = 80.6 bits (88), Expect = 5e-13 Identities = 64/77 (83%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| ||||||| ||||| |||||||||||||| ||| ||||| Sbjct 2828 GCGAACTGAAACATCTGAGTAGCTAAAGGAAGGGAAATCAACCGAGACTCCGTTAGTAGC 2887 Query 229 GGCGAGCGAAATGGGAT 245 ||||||||| | |||| Sbjct 2888 GGCGAGCGAGAGCGGAT 2904 >seq112989 Length=1638 Score = 75.2 bits (82), Expect = 2e-11 Identities = 58/69 (84%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 ||||| |||||||||| ||||||| ||||| |||||||||||||| ||| ||||| Sbjct 1316 GCGAATTGAAACATCTTAGTAGCTAAAGGAAGGGAAATCAACCGAGACTCCGTTAGTAGC 1375 Query 229 GGCGAGCGA 237 ||||||||| Sbjct 1376 GGCGAGCGA 1384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915883574816