Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq238871 127 7e-27 seq238870 127 7e-27 seq105331 91.5 5e-16 seq45384 87.8 6e-15 seq57836 75.2 4e-11 >seq238871 Length=1761 Score = 127 bits (140), Expect = 7e-27 Identities = 91/105 (87%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 379 AGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 438 || ||| |||||||||| ||| ||| |||| ||||||||| ||||||||||||||||||| Sbjct 867 AGTGGAATCGTTACGCCTTTCATGCGGGTCAGAACTTACCTGACAAGGAATTTCGCTACC 808 Query 439 TTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATT 483 || |||| ||| ||||||| |||||||| ||| ||||||||||| Sbjct 807 TTTGGATCGTTCTAGTTACGGCCGCCGTTCACTCGGGCTTCAATT 763 >seq238870 Length=2307 Score = 127 bits (140), Expect = 7e-27 Identities = 91/105 (87%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 379 AGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 438 || ||| |||||||||| ||| ||| |||| ||||||||| ||||||||||||||||||| Sbjct 2298 AGTGGAATCGTTACGCCTTTCATGCGGGTCAGAACTTACCTGACAAGGAATTTCGCTACC 2239 Query 439 TTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATT 483 || |||| ||| ||||||| |||||||| ||| ||||||||||| Sbjct 2238 TTTGGATCGTTCTAGTTACGGCCGCCGTTCACTCGGGCTTCAATT 2194 >seq105331 Length=6188 Score = 91.5 bits (100), Expect = 5e-16 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 ||||||| || |||||||||||||||||||| ||||||||||||| ||| |||||| Sbjct 208 TCGTTACACCTTTCGTGCAGGTCGGAACTTATATGACAAGGAATTTCACTAATTTAGGAC 149 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTCA 480 |||||||||| | || || |||| ||||||| Sbjct 148 TGTTATAGTTATGATTGCTATTCACTGTGGCTTCA 114 >seq45384 Length=1116 Score = 87.8 bits (96), Expect = 6e-15 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 398 TCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTAC 457 ||| ||||||| ||||| ||||||||||||||| |||||||||| |||| ||||| Sbjct 842 TCGGGCAGGTCACTACTTATGCGACAAGGAATTTCGATACCTTAGGACAGTTAGAGTTAT 901 Query 458 CACCGCCGTTTACTGGGGCTTCAATT 483 ||||||||||| |||||||| ||| Sbjct 902 TGCCGCCGTTTACCGGGGCTTCCATT 927 >seq57836 Length=7507 Score = 75.2 bits (82), Expect = 4e-11 Identities = 65/81 (80%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 406 GTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCG 465 |||||||||||| | |||||||||| |||| |||||||| ||||||||| || ||| Sbjct 685 GTCGGAACTTACTCAACAAGGAATTATGCTATCTTAGGATCATTATAGTTATGGCCACCG 626 Query 466 TTTACTGGGGCTTCAATTACC 486 || ||| ||| ||| ||||| Sbjct 625 TTCACTAGGGTTTCGGTTACC 605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1697735406976