Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq115156 87.8 2e-12 seq44518 84.2 3e-11 >seq115156 Length=4175 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 162615 CGGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTCGTCACACGCAAGAT 162674 ||| || || ||||| ||||| | | || | || |||| ||||| || || ||||| Sbjct 1536 CGGGATCCTGTTCAACCACGAGTCCCCGCGGCGGGGCGAGAACTTCGTGACCCGGAAGAT 1595 Query 162675 CGTCCGAGCCTTGTCCCGAATTAGTGTGGGACTCCAAAGTGATCTACAACTTGGAAACCT 162734 | |||||| || || || | | || || || || | || || ||||| || Sbjct 1596 CACTCGAGCCGTGGGGCGGATCAAGATCGGGCTGCAGAGCAAGCTGTTCCTGGGAAATCT 1655 Query 162735 CAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGTAGAGGCTATGTGGTTGATGCT 162794 | ||| || |||||||| |||| |||||||| |||||||||||| ||||| | Sbjct 1656 GCAGGCCTCCCGGGACTGGGGTTTCGCCGGGGACTACGTGGAGGCTATGTGGATGATGTT 1715 Query 162795 TCAGCAAGAGAAGCCAGATGATTATGTGATCGCAAC 162830 |||||||| ||||| ||||| || ||| | || || Sbjct 1716 GCAGCAAGAAAAGCCGGATGACTACGTGGTGGCGAC 1751 >seq44518 Length=1747 Score = 84.2 bits (92), Expect = 3e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 162625 TTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTCGTCACACGCAAGATCGTCCGAGCC 162684 ||||| ||||| | | || | || |||| ||||| || || |||||| ||||| Sbjct 504 TTCAACCACGAGTCCCCCCGGCGGGGCGAGAACTTCGTGACCCGGAAGATCACTCGAGCT 563 Query 162685 TTGTCCCGAATTAGTGTGGGACTCCAAAGTGATCTACAACTTGGAAACCTCAATGCCCGA 162744 || || || | | || || || || | || || ||||| || | ||| Sbjct 564 GTGGGGCGGATCAAGATCGGGCTGCAGAGCAAGCTGTTCCTGGGAAATCTGCAGGCCTCC 623 Query 162745 CGTGACTGGGGACACGCCAAAGACTACGTAGAGGCTATGTGGTTGATGCTTCAGCAAGAG 162804 || |||||||| ||| |||||||| |||||||||||| ||||| | |||||||| Sbjct 624 CGGGACTGGGGTTTTGCCGGGGACTACGTGGAGGCTATGTGGATGATGTTGCAGCAAGAA 683 Query 162805 AAGCCAGATGATTATGTGATCGCAAC 162830 ||||||||||| || ||| | ||||| Sbjct 684 AAGCCAGATGACTACGTGGTGGCAAC 709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 689090943596760