Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq4951 86.0 1e-14 seq9 80.6 5e-13 >seq4951 Length=160137 Score = 86.0 bits (94), Expect = 1e-14 Identities = 210/312 (67%), Gaps = 10/312 (3%) Strand=Plus/Plus Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGG 71 |||| |||||||||| | |||| ||| || ||||| || |||| || | | | || Sbjct 109954 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGACT-ACTAGG 110012 Query 72 ----TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTA 127 |||| |||||||| ||| | |||||||| ||| | | | | || || ||||| Sbjct 110013 ACTCTGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTA 110071 Query 128 AGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGG 187 |||| | ||| ||||| || ||||||||| ||| | ||||| | || || Sbjct 110072 AGGGAACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACTGC 110127 Query 188 CGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGA 247 | ||| |||| | |||||||| ||| || |||| ||||| ||| | | Sbjct 110128 TTATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAG 110187 Query 248 TGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAA 307 |||||| |||||||| | |||||| | | ||||||| | | || ||||||||||| Sbjct 110188 TGGAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAA 110247 Query 308 GGCCAATCAAAC 319 |||| || ||| Sbjct 110248 TGCCACTCGAAC 110259 Score = 86.0 bits (94), Expect = 1e-14 Identities = 210/312 (67%), Gaps = 10/312 (3%) Strand=Plus/Minus Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGG 71 |||| |||||||||| | |||| ||| || ||||| || |||| || | | | || Sbjct 139056 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGACT-ACTAGG 138998 Query 72 ----TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTA 127 |||| |||||||| ||| | |||||||| ||| | | | | || || ||||| Sbjct 138997 ACTCTGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTA 138939 Query 128 AGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGG 187 |||| | ||| ||||| || ||||||||| ||| | ||||| | || || Sbjct 138938 AGGGAACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACTGC 138883 Query 188 CGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGA 247 | ||| |||| | |||||||| ||| || |||| ||||| ||| | | Sbjct 138882 TTATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAG 138823 Query 248 TGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAA 307 |||||| |||||||| | |||||| | | ||||||| | | || ||||||||||| Sbjct 138822 TGGAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAA 138763 Query 308 GGCCAATCAAAC 319 |||| || ||| Sbjct 138762 TGCCACTCGAAC 138751 >seq9 Length=39018107 Score = 80.6 bits (88), Expect = 5e-13 Identities = 209/312 (67%), Gaps = 10/312 (3%) Strand=Plus/Plus Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGG 71 |||| |||||||||| | |||| ||| || ||||| || |||| || | | | || Sbjct 28484319 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGACT-ACTAGG 28484377 Query 72 ----TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTA 127 |||| |||||||| ||| | |||||||| ||| | | | | || || ||||| Sbjct 28484378 ACTCTGACCGCGTGCCTATTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTA 28484436 Query 128 AGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGG 187 |||| | ||| ||||| || ||||||||| ||| | ||||| | || || Sbjct 28484437 AGGGAACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACTGC 28484492 Query 188 CGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGA 247 | ||| |||| | |||||||| ||| || |||| ||||| ||| | | Sbjct 28484493 TTATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAG 28484552 Query 248 TGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAA 307 |||||| ||||||| | |||||| | | ||||||| | | || ||||||||||| Sbjct 28484553 TGGAGGTCCGAACCAACTGATGTTGAAGAATCAACGGATGAGTTGTGGTTAGGGGTGAAA 28484612 Query 308 GGCCAATCAAAC 319 |||| || ||| Sbjct 28484613 TGCCACTCGAAC 28484624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972751836672