Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02]
4,951 sequences; 691,429,809 total letters
Query= AAMG01000140.1
Length=336
Score E
Sequences producing significant alignments: (Bits) Value
seq4951 86.0 1e-14
seq9 80.6 5e-13
>seq4951
Length=160137
Score = 86.0 bits (94), Expect = 1e-14
Identities = 210/312 (67%), Gaps = 10/312 (3%)
Strand=Plus/Plus
Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGG 71
|||| |||||||||| | |||| ||| || ||||| || |||| || | | | ||
Sbjct 109954 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGACT-ACTAGG 110012
Query 72 ----TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTA 127
|||| |||||||| ||| | |||||||| ||| | | | | || || |||||
Sbjct 110013 ACTCTGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTA 110071
Query 128 AGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGG 187
|||| | ||| ||||| || ||||||||| ||| | ||||| | || ||
Sbjct 110072 AGGGAACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACTGC 110127
Query 188 CGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGA 247
| ||| |||| | |||||||| ||| || |||| ||||| ||| | |
Sbjct 110128 TTATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAG 110187
Query 248 TGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAA 307
|||||| |||||||| | |||||| | | ||||||| | | || |||||||||||
Sbjct 110188 TGGAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAA 110247
Query 308 GGCCAATCAAAC 319
|||| || |||
Sbjct 110248 TGCCACTCGAAC 110259
Score = 86.0 bits (94), Expect = 1e-14
Identities = 210/312 (67%), Gaps = 10/312 (3%)
Strand=Plus/Minus
Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGG 71
|||| |||||||||| | |||| ||| || ||||| || |||| || | | | ||
Sbjct 139056 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGACT-ACTAGG 138998
Query 72 ----TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTA 127
|||| |||||||| ||| | |||||||| ||| | | | | || || |||||
Sbjct 138997 ACTCTGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTA 138939
Query 128 AGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGG 187
|||| | ||| ||||| || ||||||||| ||| | ||||| | || ||
Sbjct 138938 AGGGAACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACTGC 138883
Query 188 CGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGA 247
| ||| |||| | |||||||| ||| || |||| ||||| ||| | |
Sbjct 138882 TTATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAG 138823
Query 248 TGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAA 307
|||||| |||||||| | |||||| | | ||||||| | | || |||||||||||
Sbjct 138822 TGGAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAA 138763
Query 308 GGCCAATCAAAC 319
|||| || |||
Sbjct 138762 TGCCACTCGAAC 138751
>seq9
Length=39018107
Score = 80.6 bits (88), Expect = 5e-13
Identities = 209/312 (67%), Gaps = 10/312 (3%)
Strand=Plus/Plus
Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGG 71
|||| |||||||||| | |||| ||| || ||||| || |||| || | | | ||
Sbjct 28484319 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGACT-ACTAGG 28484377
Query 72 ----TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTA 127
|||| |||||||| ||| | |||||||| ||| | | | | || || |||||
Sbjct 28484378 ACTCTGACCGCGTGCCTATTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTA 28484436
Query 128 AGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGG 187
|||| | ||| ||||| || ||||||||| ||| | ||||| | || ||
Sbjct 28484437 AGGGAACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACTGC 28484492
Query 188 CGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGA 247
| ||| |||| | |||||||| ||| || |||| ||||| ||| | |
Sbjct 28484493 TTATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAG 28484552
Query 248 TGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAA 307
|||||| ||||||| | |||||| | | ||||||| | | || |||||||||||
Sbjct 28484553 TGGAGGTCCGAACCAACTGATGTTGAAGAATCAACGGATGAGTTGTGGTTAGGGGTGAAA 28484612
Query 308 GGCCAATCAAAC 319
|||| || |||
Sbjct 28484613 TGCCACTCGAAC 28484624
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 972751836672
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |