Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02]
4,951 sequences; 691,429,809 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq2 398 1e-108
seq17 383 3e-104
seq7 361 8e-98
seq10 297 3e-78
seq9 242 6e-62
seq38 149 9e-34
>seq2
Length=64235786
Score = 398 bits (440), Expect = 1e-108
Identities = 244/256 (95%), Gaps = 3/256 (1%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 26406813 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 26406870
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 26406871 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 26406930
Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180
||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 26406931 CCCAGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 26406990
Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 26406991 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCG 26407050
Query 241 GCCAT-CTCCCTCGAA 255
||||| |||||| ||
Sbjct 26407051 GCCATAGTCCCTCTAA 26407066
Score = 398 bits (440), Expect = 1e-108
Identities = 244/256 (95%), Gaps = 3/256 (1%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 26444430 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 26444487
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 26444488 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 26444547
Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180
||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 26444548 CCCAGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 26444607
Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 26444608 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCG 26444667
Query 241 GCCAT-CTCCCTCGAA 255
||||| |||||| ||
Sbjct 26444668 GCCATAGTCCCTCTAA 26444683
Score = 361 bits (400), Expect = 8e-98
Identities = 236/256 (92%), Gaps = 3/256 (1%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
Sbjct 26558080 GTTCAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCACTTACTAGGAATT-C 26558137
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 26558138 CTCGTTGAAGACCAACAATTGCAATGATCTATCTCCATCACGATGAAATTTCAAAGATTA 26558197
Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180
||| | |||||||||||||| ||||||||||||||||||||||| ||||||| ||||||
Sbjct 26558198 CCCAGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTATAGCGCGTGTGCGG 26558257
Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240
||||||||||||||||||||||||||||| |||||||| ||||||||| ||| |||| |
Sbjct 26558258 CCCAGAACATCTAAGGGCATCACAGACCTATTATTGCCCCAAACTTCCTTGGACTAAGCG 26558317
Query 241 GCCAT-CTCCCTCGAA 255
||||| |||||| ||
Sbjct 26558318 GCCATAATCCCTCTAA 26558333
Score = 352 bits (390), Expect = 4e-95
Identities = 238/256 (93%), Gaps = 9/256 (4%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 26397140 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 26397197
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 26397198 CTCGT-GAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATT-CAAAGATTA 26397255
Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180
||| | ||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 26397256 CCCAGGCCTGTCGGCCA--GCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 26397313
Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240
|||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||| |
Sbjct 26397314 CCCAGAACATCTAA-GGCATCACAGACCTGTTATTGCCTC-AACTTCCTTGGCCTAAGCG 26397371
Query 241 GCCAT-CTCCCTCGAA 255
||||| |||||| ||
Sbjct 26397372 GCCATAGTCCCTCTAA 26397387
>seq17
Length=836409
Score = 383 bits (424), Expect = 3e-104
Identities = 241/256 (94%), Gaps = 3/256 (1%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
Sbjct 22302 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGTTTACTAGGAATT-C 22245
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 22244 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAACATTA 22185
Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180
||| | |||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 22184 CCCAGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAATGTAGCGCGCGTGCGG 22125
Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 22124 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCG 22065
Query 241 GCCAT-CTCCCTCGAA 255
||||| |||||| ||
Sbjct 22064 GCCATAGTCCCTCTAA 22049
>seq7
Length=52445601
Score = 361 bits (400), Expect = 8e-98
Identities = 236/256 (92%), Gaps = 3/256 (1%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||| |
Sbjct 37652033 GTACAAAGGGCATGGACGTAGTCAACGCGAGCT-GATGACTCGCACTTACTAGGAATT-C 37651976
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 37651975 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 37651916
Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180
||| | |||||| || |||| |||||||||||||||||||||||||||| ||| |||||
Sbjct 37651915 CCCAGGCCTGTCAGCTAAGGCTATAGACTCGTTGAATACATCAGTGTAGCACGCATGCGG 37651856
Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240
|||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||| |
Sbjct 37651855 CCCAGAACATCTAAGGGCATCACAGACCTGTTGTTGCCTCAAACTTCCTTGGCTTAAGCG 37651796
Query 241 GCCAT-CTCCCTCGAA 255
||||| |||||| ||
Sbjct 37651795 GCCATAGTCCCTCTAA 37651780
>seq10
Length=39358841
Score = 297 bits (328), Expect = 3e-78
Identities = 179/186 (96%), Gaps = 2/186 (1%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 16383961 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 16384018
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 16384019 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 16384078
Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180
|| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 16384079 CCTAGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 16384138
Query 181 CCCAGA 186
||||||
Sbjct 16384139 CCCAGA 16384144
>seq9
Length=39018107
Score = 242 bits (268), Expect = 6e-62
Identities = 152/160 (95%), Gaps = 3/160 (2%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 33904975 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 33904918
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 33904917 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 33904858
Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACA 160
|| | |||||||||||||| ||||||||| ||||||||
Sbjct 33904857 CCTAGGCCTGTCGGCCAAGGCTATAGACTCG-TGAATACA 33904819
>seq38
Length=444919
Score = 149 bits (164), Expect = 9e-34
Identities = 111/122 (91%), Gaps = 6/122 (5%)
Strand=Plus/Plus
Query 1 GTACAAA-GGGCAGGG-ACGTAGTCAAC-GCGAGCTTGATGACTCG-CGCTTACTAGGAA 56
||||||| |||||||| ||||||||||| ||||| | ||||||||| ||||||||||| |
Sbjct 432662 GTACAAAAGGGCAGGGGACGTAGTCAACCGCGAGAT-GATGACTCGACGCTTACTAGGGA 432720
Query 57 TTTCCTCGTTGAAGACCAACAATTGCA-ATGATCTATCCCCATCACGATGAAATTTCAAA 115
||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||
Sbjct 432721 ATTCCTCGTTGAAGACCACCAATTGCATATGATCTATCCCCATCACGACGAAATTTCAAA 432780
Query 116 GA 117
||
Sbjct 432781 GA 432782
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751963931965
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |