Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq2 398 1e-108 seq17 383 3e-104 seq7 361 8e-98 seq10 297 3e-78 seq9 242 6e-62 seq38 149 9e-34 >seq2 Length=64235786 Score = 398 bits (440), Expect = 1e-108 Identities = 244/256 (95%), Gaps = 3/256 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 26406813 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 26406870 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 26406871 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 26406930 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 26406931 CCCAGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 26406990 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 26406991 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCG 26407050 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 26407051 GCCATAGTCCCTCTAA 26407066 Score = 398 bits (440), Expect = 1e-108 Identities = 244/256 (95%), Gaps = 3/256 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 26444430 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 26444487 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 26444488 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 26444547 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 26444548 CCCAGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 26444607 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 26444608 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCG 26444667 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 26444668 GCCATAGTCCCTCTAA 26444683 Score = 361 bits (400), Expect = 8e-98 Identities = 236/256 (92%), Gaps = 3/256 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 || |||||||||||||||||||||||||||||| |||||||||| ||||||||||||| | Sbjct 26558080 GTTCAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCACTTACTAGGAATT-C 26558137 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 26558138 CTCGTTGAAGACCAACAATTGCAATGATCTATCTCCATCACGATGAAATTTCAAAGATTA 26558197 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||| | |||||||||||||| ||||||||||||||||||||||| ||||||| |||||| Sbjct 26558198 CCCAGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTATAGCGCGTGTGCGG 26558257 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 ||||||||||||||||||||||||||||| |||||||| ||||||||| ||| |||| | Sbjct 26558258 CCCAGAACATCTAAGGGCATCACAGACCTATTATTGCCCCAAACTTCCTTGGACTAAGCG 26558317 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 26558318 GCCATAATCCCTCTAA 26558333 Score = 352 bits (390), Expect = 4e-95 Identities = 238/256 (93%), Gaps = 9/256 (4%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 26397140 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 26397197 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 26397198 CTCGT-GAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATT-CAAAGATTA 26397255 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||| | ||||||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct 26397256 CCCAGGCCTGTCGGCCA--GCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 26397313 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||| | Sbjct 26397314 CCCAGAACATCTAA-GGCATCACAGACCTGTTATTGCCTC-AACTTCCTTGGCCTAAGCG 26397371 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 26397372 GCCATAGTCCCTCTAA 26397387 >seq17 Length=836409 Score = 383 bits (424), Expect = 3e-104 Identities = 241/256 (94%), Gaps = 3/256 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| | Sbjct 22302 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGTTTACTAGGAATT-C 22245 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 22244 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAACATTA 22185 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||| | |||||||||||||| ||||||||||||||||||||| |||||||||||||||| Sbjct 22184 CCCAGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAATGTAGCGCGCGTGCGG 22125 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 22124 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCG 22065 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 22064 GCCATAGTCCCTCTAA 22049 >seq7 Length=52445601 Score = 361 bits (400), Expect = 8e-98 Identities = 236/256 (92%), Gaps = 3/256 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||| | Sbjct 37652033 GTACAAAGGGCATGGACGTAGTCAACGCGAGCT-GATGACTCGCACTTACTAGGAATT-C 37651976 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 37651975 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 37651916 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||| | |||||| || |||| |||||||||||||||||||||||||||| ||| ||||| Sbjct 37651915 CCCAGGCCTGTCAGCTAAGGCTATAGACTCGTTGAATACATCAGTGTAGCACGCATGCGG 37651856 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||| | Sbjct 37651855 CCCAGAACATCTAAGGGCATCACAGACCTGTTGTTGCCTCAAACTTCCTTGGCTTAAGCG 37651796 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 37651795 GCCATAGTCCCTCTAA 37651780 >seq10 Length=39358841 Score = 297 bits (328), Expect = 3e-78 Identities = 179/186 (96%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 16383961 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 16384018 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16384019 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 16384078 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 || | |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 16384079 CCTAGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 16384138 Query 181 CCCAGA 186 |||||| Sbjct 16384139 CCCAGA 16384144 >seq9 Length=39018107 Score = 242 bits (268), Expect = 6e-62 Identities = 152/160 (95%), Gaps = 3/160 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 33904975 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 33904918 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 33904917 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 33904858 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACA 160 || | |||||||||||||| ||||||||| |||||||| Sbjct 33904857 CCTAGGCCTGTCGGCCAAGGCTATAGACTCG-TGAATACA 33904819 >seq38 Length=444919 Score = 149 bits (164), Expect = 9e-34 Identities = 111/122 (91%), Gaps = 6/122 (5%) Strand=Plus/Plus Query 1 GTACAAA-GGGCAGGG-ACGTAGTCAAC-GCGAGCTTGATGACTCG-CGCTTACTAGGAA 56 ||||||| |||||||| ||||||||||| ||||| | ||||||||| ||||||||||| | Sbjct 432662 GTACAAAAGGGCAGGGGACGTAGTCAACCGCGAGAT-GATGACTCGACGCTTACTAGGGA 432720 Query 57 TTTCCTCGTTGAAGACCAACAATTGCA-ATGATCTATCCCCATCACGATGAAATTTCAAA 115 ||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||| Sbjct 432721 ATTCCTCGTTGAAGACCACCAATTGCATATGATCTATCCCCATCACGACGAAATTTCAAA 432780 Query 116 GA 117 || Sbjct 432781 GA 432782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751963931965