Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02]
4,951 sequences; 691,429,809 total letters
Query= AAMG01000383.1
Length=435
Score E
Sequences producing significant alignments: (Bits) Value
seq4951 226 7e-57
seq428 118 3e-24
seq320 111 4e-22
seq23 109 1e-21
seq7 107 5e-21
seq1 105 2e-20
seq10 102 2e-19
seq4043 95.1 3e-17
seq9 91.5 4e-16
seq11 86.0 2e-14
seq5 78.8 2e-12
seq2 78.8 2e-12
>seq4951
Length=160137
Score = 226 bits (250), Expect = 7e-57
Identities = 296/409 (72%), Gaps = 2/409 (0%)
Strand=Plus/Plus
Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62
|| ||| ||||||||| ||||||||| |||||||||||||||||||||| ||| |||
Sbjct 105978 TATCTGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGC 106037
Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122
|||||||| |||||| | |||||||||||||| | ||| || | | |||| | | ||
Sbjct 106038 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGT 106097
Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182
||||||| ||||| |||| ||| || | | ||| | || |||| | ||
Sbjct 106098 CAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGG 106157
Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242
|| | |||||| | ||| ||| |||||||||||||| || | | ||||||||| ||
Sbjct 106158 GGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGG 106217
Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302
|||| ||| | ||||| |||||||| || | ||||||| ||||||| || |
Sbjct 106218 CGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGGCGAAAGCTAGGGGAGCGAATGG 106277
Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACT 362
|||||||||||| ||||||| ||| |||||||| ||||| | || | | |
Sbjct 106278 GATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGA 106337
Query 363 TCCTTG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409
|| || || ||||||||||||| |||| ||||||||||| |||
Sbjct 106338 CCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 106386
Score = 226 bits (250), Expect = 7e-57
Identities = 296/409 (72%), Gaps = 2/409 (0%)
Strand=Plus/Minus
Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62
|| ||| ||||||||| ||||||||| |||||||||||||||||||||| ||| |||
Sbjct 143032 TATCTGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGC 142973
Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122
|||||||| |||||| | |||||||||||||| | ||| || | | |||| | | ||
Sbjct 142972 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGT 142913
Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182
||||||| ||||| |||| ||| || | | ||| | || |||| | ||
Sbjct 142912 CAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGG 142853
Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242
|| | |||||| | ||| ||| |||||||||||||| || | | ||||||||| ||
Sbjct 142852 GGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGG 142793
Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302
|||| ||| | ||||| |||||||| || | ||||||| ||||||| || |
Sbjct 142792 CGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGGCGAAAGCTAGGGGAGCGAATGG 142733
Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACT 362
|||||||||||| ||||||| ||| |||||||| ||||| | || | | |
Sbjct 142732 GATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGA 142673
Query 363 TCCTTG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409
|| || || ||||||||||||| |||| ||||||||||| |||
Sbjct 142672 CCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 142624
>seq428
Length=28134
Score = 118 bits (130), Expect = 3e-24
Identities = 160/222 (72%), Gaps = 2/222 (1%)
Strand=Plus/Minus
Query 190 GGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGC 249
|||||| | ||| ||| |||||||||||||| || | | ||||||||| |||||| ||
Sbjct 3255 GGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAAAGC 3196
Query 250 AGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGA 309
| | ||||| |||||||| || | ||||||| ||||||| || ||||||||
Sbjct 3195 ACTCTGCTGGGCCGACACTGACACTGAGAGGCGAAAGCTAGGGGAGCGAATGGGATTAGA 3136
Query 310 TACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACTTCCTTG- 368
||||| ||||||| ||| |||||||| ||||| | || | | | || ||
Sbjct 3135 TACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGACCCGTGC 3076
Query 369 -GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409
| ||||||||||||| |||| ||||||||||| |||
Sbjct 3075 AATGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 3034
>seq320
Length=36444
Score = 111 bits (122), Expect = 4e-22
Identities = 111/144 (77%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62
|| ||| ||||||||| ||||||||| ||||||| |||||||||||||| ||| |||
Sbjct 25543 TATCTGGGGAATAAGCATCGGCTAACTCTGTGCCAGTAGCCGCGGTAATACAGAGGATGC 25602
Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122
|||||||| ||||| | ||| |||||||||| | ||| || | | |||| | ||
Sbjct 25603 AAGCGTTATCTGGAATGATTGGACGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCACCGT 25662
Query 123 GAAATCCCCGGGCTTAACCTGGGA 146
|||||| ||||| ||||| |||
Sbjct 25663 CAAATCCTAGGGCTCAACCTTGGA 25686
>seq23
Length=625428
Score = 109 bits (120), Expect = 1e-21
Identities = 222/327 (68%), Gaps = 2/327 (1%)
Strand=Plus/Plus
Query 12 AATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAA 71
|||||||| ||||||||| |||||||| || |||||||| ||| |||||| ||||
Sbjct 541705 AATAAGCATCGGCTAACTCTATGCCAGCAACCATGGTAATACAGAGGATGCAAGTGTTAT 541764
Query 72 TCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCCC 131
| ||||| | || ||||||| ||| | || || | | | || | | || |||||||
Sbjct 541765 TTGGAATGATTGAGCGTAAAACGTCTGTAGATGGCTTTTTGAGGCTGCCGTCAAATCCCA 541824
Query 132 GGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGT-GTCAGAGGGGGGTG 190
||||| |||| ||| | | | | ||| | ||| ||| | || || | | | |
Sbjct 541825 GGGCTCAACCCTGGACAAGTAGTAGAAACTACCAAGCTAAAGTATAGTAAGGGTAGAG-G 541883
Query 191 GAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCA 250
||||| ||| ||| ||||||||| | || | | | ||||||||| || ||| |||
Sbjct 541884 GAATTTTCGGTGGAGCGGTGAAATGCATGGAGACTGGAAAGAACACCAACGGTGAAAGCA 541943
Query 251 GCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGAT 310
|| || ||| |||| || | |||||| ||||||| || |||||||||
Sbjct 541944 CTATGCTAGGTCGACATTGACACTAAGAGTTGAAAGCTAGGGGAGCGAATGGGATTAGAT 542003
Query 311 ACCCTGGTAGTCCACGCCCTAAACGAT 337
|| | |||||| || ||||| ||
Sbjct 542004 ACTCCAATAGTCCTAGCTGTAAACAAT 542030
>seq7
Length=52445601
Score = 107 bits (118), Expect = 5e-21
Identities = 127/171 (74%), Gaps = 1/171 (1%)
Strand=Plus/Plus
Query 167 ACTAGAGTGTGTCAGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGT 226
||| ||||| | |||||| | |||||||| | ||||| ||||||| | |||| | |
Sbjct 38857808 ACTTGAGTGAGACAGAGGAGAGTGGAATTTCGTTTGTAGAGGTGAAATCTGGAGATCTAT 38857867
Query 227 GGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAG 286
| |||| |||| |||||| |||| | ||||| || ||| || || ||||||
Sbjct 38857868 GAAGGAGG-CCAAAAGCGAAGACAGCTCTCTGGGTCCCTACCGACACTGGTGTGCGAAAG 38857926
Query 287 CGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337
| | ||| || ||| | ||||||||||||||||||||| ||| ||||||||
Sbjct 38857927 CATTGGGGGCGAACGGAATTAGATACCCTGGTAGTCCATGCCGTAAACGAT 38857977
>seq1
Length=40297282
Score = 105 bits (116), Expect = 2e-20
Identities = 79/93 (85%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62
|| ||| ||||||||| ||||||||| |||||||||||||||||||||| || |||
Sbjct 3755480 TATCTGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGAATGC 3755421
Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGT 95
|||||||| |||||| | ||||||||||||||
Sbjct 3755420 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGT 3755388
>seq10
Length=39358841
Score = 102 bits (112), Expect = 2e-19
Identities = 110/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 192 AATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAG 251
|||| | ||| ||| |||||||||||||| || | | ||||||||| |||||| |||
Sbjct 30526395 AATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAAAGCAC 30526336
Query 252 CCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATA 311
| || || |||||||| || | ||||||| ||||||| || ||||||||||
Sbjct 30526335 TCTGCTAGGCCGACACTGACACTGAGAGGCGAAAGCTAGGGGAGCGAATGGGATTAGATA 30526276
Query 312 CCCTGGTAGTCCACGCCCTAAACGAT 337
||| ||||||| ||| ||||||||
Sbjct 30526275 CCCCAGTAGTCCTAGCCGTAAACGAT 30526250
>seq4043
Length=3217
Score = 95.1 bits (104), Expect = 3e-17
Identities = 82/102 (80%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 236 CCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAG 295
||||||||| | |||| || || | | |||| || | | |||||||||| |||||
Sbjct 1792 CCAATGGCGGAAGCAGGTTACTAGGTAGAGATTGACACTGAGGTACGAAAGCGTAGGGAG 1733
Query 296 CAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337
||||||| ||||||||| ||||||||| ||||||||||||||
Sbjct 1732 CAAACAGAATTAGATACTCTGGTAGTCTACGCCCTAAACGAT 1691
>seq9
Length=39018107
Score = 91.5 bits (100), Expect = 4e-16
Identities = 71/85 (84%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 11 GAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTA 70
||||||||| ||||||||| ||||||||||||||||||||| ||| | |||| ||||
Sbjct 964613 GAATAAGCATCGGCTAACTCAGTGCCAGCAGCCGCGGTAATATAAAGGATACAAGTGTTA 964672
Query 71 ATCGGAATTACTGGGCGTAAAGCGT 95
||||||| | | ||||||||| ||
Sbjct 964673 TTCGGAATGATTTGGCGTAAAGTGT 964697
Score = 91.5 bits (100), Expect = 4e-16
Identities = 77/95 (81%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 11 GAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTA 70
||||||||| | ||||||| |||||||||||| || |||||| ||| | |||||||||
Sbjct 2019088 GAATAAGCATCAGCTAACTCAGTGCCAGCAGCCACGATAATACAGAGGATACAAGCGTTA 2019147
Query 71 ATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGG 105
||||||| | | ||||||||| || | ||||||
Sbjct 2019148 TTCGGAATGATTTGGCGTAAAGTGTCTGTAGGCGG 2019182
>seq11
Length=45509462
Score = 86.0 bits (94), Expect = 2e-14
Identities = 64/75 (85%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62
|| ||| ||||||||| ||||||||| |||||||||||||||||||||| ||| |||
Sbjct 19774160 TATCTGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGC 19774101
Query 63 AAGCGTTAATCGGAA 77
|||||||| |||||
Sbjct 19774100 AAGCGTTATCCGGAA 19774086
>seq5
Length=74729908
Score = 78.8 bits (86), Expect = 2e-12
Identities = 100/139 (72%), Gaps = 8/139 (6%)
Strand=Plus/Minus
Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62
|| ||| |||||| || ||||||||| |||| |||||||||| ||| |||
Sbjct 8711701 TATCTGGGGAATAAACATCGGCTAACTCTGTGC--------GCGGTAATACAAAGGATGC 8711650
Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122
|||||||| |||||| | ||| |||||||||| | ||| || | | |||| | ||
Sbjct 8711649 AAGCGTTATCCGGAATGATTGGACGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCACCGT 8711590
Query 123 GAAATCCCCGGGCTTAACC 141
|||||| ||||| ||||
Sbjct 8711589 CAAATCCTAGGGCTCAACC 8711571
>seq2
Length=64235786
Score = 78.8 bits (86), Expect = 2e-12
Identities = 67/83 (81%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 11 GAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTA 70
||||||||| || |||||| ||||||||| | | |||||||| ||| |||||||||||
Sbjct 1970390 GAATAAGCATCGACTAACTCTGTGCCAGCAACTGTGGTAATACAGAGGATGCAAGCGTTA 1970449
Query 71 ATCGGAATTACTGGGCGTAAAGC 93
|| || | ||||||||||||
Sbjct 1970450 TCCGAGATGATTGGGCGTAAAGC 1970472
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1289536151904
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