Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq4951 141 1e-31 seq9 118 1e-24 seq2 114 2e-23 seq3 105 9e-21 seq10 87.8 2e-15 seq5 82.4 1e-13 seq708 78.8 1e-12 seq1 75.2 2e-11 >seq4951 Length=160137 Score = 141 bits (156), Expect = 1e-31 Identities = 177/243 (73%), Gaps = 20/243 (8%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 111314 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 111256 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| || Sbjct 111255 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 111209 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 111208 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 111155 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| |||||||||||||||| | Sbjct 111154 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 111095 Query 246 GTA 248 ||| Sbjct 111094 GTA 111092 Score = 141 bits (156), Expect = 1e-31 Identities = 177/243 (73%), Gaps = 20/243 (8%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 137696 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 137754 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| || Sbjct 137755 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 137801 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 137802 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 137855 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| |||||||||||||||| | Sbjct 137856 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 137915 Query 246 GTA 248 ||| Sbjct 137916 GTA 137918 >seq9 Length=39018107 Score = 118 bits (130), Expect = 1e-24 Identities = 172/243 (71%), Gaps = 20/243 (8%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || ||| Sbjct 28485679 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACT 28485621 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| ||||| |||||| || || |||||||| || Sbjct 28485620 TGTGTTTTTGGTAAATAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 28485574 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||||||||||||| ||||||| ||||| |||||||||| ||||| Sbjct 28485573 TTGTG----AGGAG--GCACCCCTTCTCCTGAAGTTATGGGGCTATTTTGCCGAGTTCCT 28485520 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 | | |||| | || | ||| ||||||||||||| |||||||||||||||| | Sbjct 28485519 CAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 28485460 Query 246 GTA 248 ||| Sbjct 28485459 GTA 28485457 Score = 77.0 bits (84), Expect = 5e-12 Identities = 45/47 (96%), Gaps = 0/47 (0%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTA 187 |||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 26369258 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 26369212 Score = 75.2 bits (82), Expect = 2e-11 Identities = 80/103 (78%), Gaps = 2/103 (2%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||| || |||| | | ||| |||||||||| ||||||| | |||| | Sbjct 8344863 GGCACCCCTTCTTCCAAAGTGATGAGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 8344804 Query 201 CGAACGCCTTA-GTATTCTCTACCTGACCACCTGTGTCGGTTT 242 || | ||||| |||| || ||||| |||||||||| ||||| Sbjct 8344803 CGTGC-CCTTATGTATGCTATACCTACCCACCTGTGTTGGTTT 8344762 >seq2 Length=64235786 Score = 114 bits (126), Expect = 2e-23 Identities = 90/108 (83%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||||||||||||||||| |||||||||| ||||||| | |||| | Sbjct 55173695 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 55173636 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || | ||| ||||||||||||| |||||||||||||||| |||| Sbjct 55173635 CGTGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGGGTA 55173588 Score = 100 bits (110), Expect = 4e-19 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 ||||||||||||||||||||||| |||| |||||||||| ||||||| | |||| | Sbjct 6694941 GGCACCCCTTCTCCCGAAGTTACTGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 6694882 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || | ||| ||||||||||||| |||||| ||||| ||| |||| Sbjct 6694881 CGCGCTCCTAGGTATTCTCTACCTACCCACCTATGTCGATTTCGGGTA 6694834 >seq3 Length=80079441 Score = 105 bits (116), Expect = 9e-21 Identities = 169/243 (70%), Gaps = 20/243 (8%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| |||||||||||| || |||||| | ||||| | |||||| ||| Sbjct 56889332 CCTTCCGGCACTAGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTCGCGGAGACT 56889390 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 | ||||||| ||||| |||||| || || ||| |||| || Sbjct 56889391 TATGTTTTTGGTAAATAGTCGCCCGGGCCTGGTCACTGTGACCCCCT------------- 56889437 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||||||||||||||||||||||| ||| |||||||| | ||||| Sbjct 56889438 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGAGGCTATTTTGCCAAGTTCCT 56889491 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | | | ||| ||||||||||||| ||||||||||| |||| | Sbjct 56889492 TAGAGAGAGTTGTCTCACGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCAGTTTCGG 56889551 Query 246 GTA 248 ||| Sbjct 56889552 GTA 56889554 Score = 89.7 bits (98), Expect = 7e-16 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 ||||||||||||||| ||||| || || |||||||||| ||||||| | |||| | Sbjct 62050546 GGCACCCCTTCTCCCAAAGTTGCGAGGTTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 62050605 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242 || | ||| ||||||||||||| |||||| ||||||||| Sbjct 62050606 CGCGCCCCTAGGTATTCTCTACCTACCCACCTATGTCGGTTT 62050647 Score = 89.7 bits (98), Expect = 7e-16 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||||||||||||| || |||||||||| ||||||| | |||| | Sbjct 63227003 GGCACCCCTTCTCCCGAAGTTACGAGGTTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 63227062 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242 | | ||| ||||| ||||||| |||||| ||||||||| Sbjct 63227063 CACGCCCCTAGGTATTTTCTACCTACCCACCTATGTCGGTTT 63227104 Score = 89.7 bits (98), Expect = 7e-16 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||||||||||||| || |||||| ||| |||||| | |||| | Sbjct 66575613 GGCACCCCTTCTCCCGAAGTTACGAGGTTATTTTGTCGAGCTCCTTAGAGAGAGTTGTCT 66575672 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242 || | ||| ||||||||||||| |||||| ||||||||| Sbjct 66575673 CGCGCCCCTAGGTATTCTCTACCTACCCACCTATGTCGGTTT 66575714 >seq10 Length=39358841 Score = 87.8 bits (96), Expect = 2e-15 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 ||||||||||||| ||||||||||||| |||||| || || ||| | |||| | Sbjct 12842613 GGCACCCCTTCTCTTGAAGTTACGGGGCAATTTTGTTGAGTTTTTTAGAAAGAGTTGTCT 12842554 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || || ||| ||||||||||||| ||||||||||| |||| |||| Sbjct 12842553 CGCACCCCTAGGTATTCTCTACCTACCCACCTGTGTCAGTTTCGGGTA 12842506 >seq5 Length=74729908 Score = 82.4 bits (90), Expect = 1e-13 Identities = 80/102 (78%), Gaps = 1/102 (1%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 ||||||| || |||| |||||||| ||| || ||||||| |||| ||| | |||| | Sbjct 5958750 GGCACCCATT-TCCCTAAGTTACGAGGCTATCTTGCCGAGTTCCCTAAAGAAAGTTGTCT 5958692 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242 | || ||| ||||||||||||| |||| ||||||||||| Sbjct 5958691 CACACCCCTAGGTATTCTCTACCTACCCACATGTGTCGGTTT 5958650 >seq708 Length=43341 Score = 78.8 bits (86), Expect = 1e-12 Identities = 116/166 (70%), Gaps = 20/166 (12%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | |||| || ||| || |||| Sbjct 39896 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTA-CGACTTTGCGGAGACC 39838 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| | | Sbjct 39837 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC-------------CCCT 39791 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCAT 171 | || | | |||||||||||||||||||||||||||| || Sbjct 39790 TTGT------GAGGAGGCACCCCTTCTCCCGAAGTTACGGGGCTAT 39751 >seq1 Length=40297282 Score = 75.2 bits (82), Expect = 2e-11 Identities = 69/85 (81%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||||||||||||||||| ||||||| | |||||| | |||| | Sbjct 34765905 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCTAAGTTCCTTGGAGAAAGTTGTCT 34765846 Query 201 CGAACGCCTTAG-TATTCTCTACCT 224 || | |||||| |||||||||||| Sbjct 34765845 CGCGC-CCTTAGGTATTCTCTACCT 34765822 Score = 75.2 bits (82), Expect = 2e-11 Identities = 69/85 (81%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||||||||||||||||| |||||| || ||||||| | |||| | Sbjct 34766034 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGTTGAGTTCCTTAGAGAGAGTTGTCT 34765975 Query 201 CGAACGCCTTA-GTATTCTCTACCT 224 || | ||||| ||||||| ||||| Sbjct 34765974 CGTGC-CCTTAGGTATTCTTTACCT 34765951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694366694623