Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq4951 93.3 4e-17 seq2 78.8 1e-12 seq708 75.2 1e-11 seq3 75.2 1e-11 >seq4951 Length=160137 Score = 93.3 bits (102), Expect = 4e-17 Identities = 87/110 (79%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| | Sbjct 111153 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 111210 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 111211 GGGGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 111260 Score = 93.3 bits (102), Expect = 4e-17 Identities = 87/110 (79%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| | Sbjct 137857 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 137800 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 137799 GGGGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 137750 >seq2 Length=64235786 Score = 78.8 bits (86), Expect = 1e-12 Identities = 81/105 (77%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| | Sbjct 6694895 TAAGGAACTCGGCAAAATAGCCCAGTAACTTCGGGAGAAGGGGTGCCTTCTCACAAA--G 6694952 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACA 184 | || | ||| || ||| | ||| |||||||| |||||||||| Sbjct 6694953 GGGGTCACAGTGACCAGGCTCGGGCGACTGTTTACCAAAAACACA 6694997 >seq708 Length=43341 Score = 75.2 bits (82), Expect = 1e-11 Identities = 71/90 (79%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 100 CCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGGGCGCAGAGAATAGGTC 159 ||| |||||||||||| || |||| ||| | || ||| ||| | ||||| || ||| | Sbjct 39755 CCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAAGGGG--GTCGCAGTGACCAGGCC 39812 Query 160 CAGGCAACTGTTTAACAAAAACACAGGGCT 189 | ||| |||||||| |||||||||||| || Sbjct 39813 CGGGCGACTGTTTACCAAAAACACAGGTCT 39842 >seq3 Length=80079441 Score = 75.2 bits (82), Expect = 1e-11 Identities = 114/159 (72%), Gaps = 4/159 (3%) Strand=Plus/Minus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGT-TAAG 83 |||| |||||| || | ||| || |||| ||| || |||| || | | | |||| Sbjct 56889548 AAACTGACACAGGTGGGTAGGTAGAGAATACCTAGGGGCGTGAGACAA-CTCTCTCTAAG 56889490 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGG 143 ||||| |||||| | || |||||||||||| || |||| ||| | || ||| || || Sbjct 56889489 GAACTTGGCAAAATAGCCTCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--GGGGG 56889432 Query 144 GCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACA 182 | ||| || ||| || ||| ||| |||| |||||||| Sbjct 56889431 TCACAGTGACCAGGCCCGGGCGACTATTTACCAAAAACA 56889393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531174522154