Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02]
4,951 sequences; 691,429,809 total letters
Query= AAMG01000567.1
Length=197
Score E
Sequences producing significant alignments: (Bits) Value
seq4951 93.3 4e-17
seq2 78.8 1e-12
seq708 75.2 1e-11
seq3 75.2 1e-11
>seq4951
Length=160137
Score = 93.3 bits (102), Expect = 4e-17
Identities = 87/110 (79%), Gaps = 2/110 (2%)
Strand=Plus/Plus
Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139
||||||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| |
Sbjct 111153 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 111210
Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189
| || ||||| || ||| || ||| |||||||| |||||||||||| ||
Sbjct 111211 GGGGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 111260
Score = 93.3 bits (102), Expect = 4e-17
Identities = 87/110 (79%), Gaps = 2/110 (2%)
Strand=Plus/Minus
Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139
||||||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| |
Sbjct 137857 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 137800
Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189
| || ||||| || ||| || ||| |||||||| |||||||||||| ||
Sbjct 137799 GGGGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 137750
>seq2
Length=64235786
Score = 78.8 bits (86), Expect = 1e-12
Identities = 81/105 (77%), Gaps = 2/105 (2%)
Strand=Plus/Plus
Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139
||||||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| |
Sbjct 6694895 TAAGGAACTCGGCAAAATAGCCCAGTAACTTCGGGAGAAGGGGTGCCTTCTCACAAA--G 6694952
Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACA 184
| || | ||| || ||| | ||| |||||||| ||||||||||
Sbjct 6694953 GGGGTCACAGTGACCAGGCTCGGGCGACTGTTTACCAAAAACACA 6694997
>seq708
Length=43341
Score = 75.2 bits (82), Expect = 1e-11
Identities = 71/90 (79%), Gaps = 2/90 (2%)
Strand=Plus/Plus
Query 100 CCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGGGCGCAGAGAATAGGTC 159
||| |||||||||||| || |||| ||| | || ||| ||| | ||||| || ||| |
Sbjct 39755 CCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAAGGGG--GTCGCAGTGACCAGGCC 39812
Query 160 CAGGCAACTGTTTAACAAAAACACAGGGCT 189
| ||| |||||||| |||||||||||| ||
Sbjct 39813 CGGGCGACTGTTTACCAAAAACACAGGTCT 39842
>seq3
Length=80079441
Score = 75.2 bits (82), Expect = 1e-11
Identities = 114/159 (72%), Gaps = 4/159 (3%)
Strand=Plus/Minus
Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGT-TAAG 83
|||| |||||| || | ||| || |||| ||| || |||| || | | | ||||
Sbjct 56889548 AAACTGACACAGGTGGGTAGGTAGAGAATACCTAGGGGCGTGAGACAA-CTCTCTCTAAG 56889490
Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGG 143
||||| |||||| | || |||||||||||| || |||| ||| | || ||| || ||
Sbjct 56889489 GAACTTGGCAAAATAGCCTCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--GGGGG 56889432
Query 144 GCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACA 182
| ||| || ||| || ||| ||| |||| ||||||||
Sbjct 56889431 TCACAGTGACCAGGCCCGGGCGACTATTTACCAAAAACA 56889393
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531174522154
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |