Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq4951 87.8 2e-15 seq708 87.8 2e-15 seq7 80.6 3e-13 seq9 78.8 9e-13 seq2 75.2 1e-11 >seq4951 Length=160137 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 111213 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 111272 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 111273 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 111318 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 137797 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 137738 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 137737 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 137692 >seq708 Length=43341 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 39795 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 39854 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 39855 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 39900 >seq7 Length=52445601 Score = 80.6 bits (88), Expect = 3e-13 Identities = 67/82 (82%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 ||||||||||||||||||||||| ||||||| | | || ||| |||||| || ||| Sbjct 5784747 GCGACTGTTTATTAAAAACACAGGACTCTGCTAGGTGGTAACAGGATGTATAGAGTCTGA 5784688 Query 128 CGCCTGCCCGGTGCCGGAAGGT 149 | |||||| ||||| ||||||| Sbjct 5784687 CACCTGCCAGGTGCTGGAAGGT 5784666 >seq9 Length=39018107 Score = 78.8 bits (86), Expect = 9e-13 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| |||||| |||| ||||||||| ||| ||||| || Sbjct 28485578 GGTCGCAGTGACCAGGCCCGGGCGACTATTTACCAAAAACACAAGTCTCCGCAAAGTCGT 28485637 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 28485638 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 28485683 >seq2 Length=64235786 Score = 75.2 bits (82), Expect = 1e-11 Identities = 80/106 (75%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || ||||||| ||||||||||| |||||||||| ||| |||| | Sbjct 31854643 GGTCGCAGTGACCAGGCTCGGGCGACTGTTTACCAAAAACACAGGTCTCCACAAAGTCAT 31854702 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 31854703 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 31854748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476777131331