Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq2 297 3e-78 seq17 291 1e-76 seq7 273 3e-71 >seq2 Length=64235786 Score = 297 bits (328), Expect = 3e-78 Identities = 225/261 (86%), Gaps = 6/261 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 26406957 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 26407016 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||||||||||| | | || |||| | |||||||||||||||||| | Sbjct 26407017 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 26407074 Query 120 CCACCAACCA-TAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 || | || || | |||| |||||||| | ||||||||||||||||||||| Sbjct 26407075 CCGTGGAGATGTACATCCACATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTATCGGAA 26407134 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 26407135 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 26407194 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| ||| |||||| Sbjct 26407195 AGAAAGAGCTCTCAGTCTGTC 26407215 Score = 297 bits (328), Expect = 3e-78 Identities = 225/261 (86%), Gaps = 6/261 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 26444574 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 26444633 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||||||||||| | | || |||| | |||||||||||||||||| | Sbjct 26444634 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 26444691 Query 120 CCACCAACCA-TAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 || | || || | |||| |||||||| | ||||||||||||||||||||| Sbjct 26444692 CCGTGGAGATGTACATCCACATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTATCGGAA 26444751 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 26444752 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 26444811 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| ||| |||||| Sbjct 26444812 AGAAAGAGCTCTCAGTCTGTC 26444832 Score = 269 bits (298), Expect = 4e-70 Identities = 219/261 (84%), Gaps = 6/261 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | ||||| ||||||| |||||||||||||||||||||||||||||||| Sbjct 26558224 ACTCGTTGAATACATCAGTATAGCGCGTGTGCGGCCCAGAACATCTAAGGGCATCACAGA 26558283 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 ||| |||||||| ||||||||| | | || |||| | ||| |||||||||||| | | Sbjct 26558284 CCTATTATTGCCCCAAACTTCCTTGGACT--AAGCGGCCATAATCCCTCTAAGAAACTGG 26558341 Query 120 CCACCAACCA-TAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 || | || || || |||| |||||||| | ||||||||||||||||||||| Sbjct 26558342 CCGTGGAGATGTACATCCATATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTATCGGAA 26558401 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 26558402 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 26558461 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| ||| ||| || Sbjct 26558462 AGAAAGAGCTCTCAGTCTATC 26558482 Score = 255 bits (282), Expect = 9e-66 Identities = 220/261 (84%), Gaps = 11/261 (4%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 26397280 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGG-CATCACAGA 26397338 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||||| ||||| | | || |||| | |||||||||||||||||| | Sbjct 26397339 CCTGTTATTGCCTCAA-CTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 26397395 Query 120 CCACCAACCA-TAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 || | || || | |||| ||||||| | | |||||||||||||||||||| Sbjct 26397396 CCGTGGAGATGTACATCCACATAGCTAGTTAGCAGCTGA-GGTCTCGTTCGTTATCGGAA 26397454 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 26397455 TTAACCAGACAA-TCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 26397513 Query 238 AGAAAGAGCTATCAATCTGTC 258 || ||||||| ||| |||||| Sbjct 26397514 AG-AAGAGCTCTCAGTCTGTC 26397533 >seq17 Length=836409 Score = 291 bits (322), Expect = 1e-76 Identities = 224/261 (86%), Gaps = 6/261 (2%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | ||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 22158 ACTCGTTGAATACATCAATGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 22099 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||||||||||| | | || |||| | |||||||||||||||||| | Sbjct 22098 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 22041 Query 120 CCACCAACCA-TAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 || | || || | |||| |||||||| | ||||||||||||||||||||| Sbjct 22040 CCGTGGAGATGTACATCCACATAGCTACTTAGCAGGCTGAGGTCTCGTTCGTTATCGGAA 21981 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 21980 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 21921 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| ||| |||||| Sbjct 21920 AGAAAGAGCTCTCAGTCTGTC 21900 >seq7 Length=52445601 Score = 273 bits (302), Expect = 3e-71 Identities = 221/261 (85%), Gaps = 6/261 (2%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 37651889 ACTCGTTGAATACATCAGTGTAGCACGCATGCGGCCCAGAACATCTAAGGGCATCACAGA 37651830 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||| ||||||||||||||| |||||| |||| | |||||||||||||||||| | Sbjct 37651829 CCTGTTGTTGCCTCAAACTTCC-TTGGCTT-AAGCGGCCATAGTCCCTCTAAGAAGCTGG 37651772 Query 120 CCACCAACCA-TAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 | | || || | |||| |||||||| | ||||||||||||||||||||| Sbjct 37651771 TCGTGGAGATGTACATCCACATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTATCGGAA 37651712 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| Sbjct 37651711 TTAACCAGACAAATCGCTCCACCAACTAAGAACGACCATGCACCACCACCCATAGAATCA 37651652 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| ||| | |||| Sbjct 37651651 AGAAAGAGCTCTCAGTTTGTC 37651631 Score = 158 bits (174), Expect = 2e-36 Identities = 105/117 (90%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 |||| |||||||| |||||||| |||| | ||| ||||||||||||| ||||||||||| Sbjct 25557800 GCTAGTTAGCAGGCTAAGGTCTTGTTCATGGTCGAAATTAACCAGACAGATCACTCCACC 25557741 Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257 ||||||||| ||||||||||||||||||||||||| |||||||||| |||| ||||| Sbjct 25557740 AACTAAGAATGGCCATGCACCACCACCCATAGAATTAAGAAAGAGCCATCAGTCTGT 25557684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796761783231