Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02]
4,951 sequences; 691,429,809 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq2 297 3e-78
seq17 291 1e-76
seq7 273 3e-71
>seq2
Length=64235786
Score = 297 bits (328), Expect = 3e-78
Identities = 225/261 (86%), Gaps = 6/261 (2%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 26406957 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 26407016
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119
|||||||||||||||||||||| | | || |||| | |||||||||||||||||| |
Sbjct 26407017 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 26407074
Query 120 CCACCAACCA-TAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177
|| | || || | |||| |||||||| | |||||||||||||||||||||
Sbjct 26407075 CCGTGGAGATGTACATCCACATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTATCGGAA 26407134
Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 26407135 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 26407194
Query 238 AGAAAGAGCTATCAATCTGTC 258
|||||||||| ||| ||||||
Sbjct 26407195 AGAAAGAGCTCTCAGTCTGTC 26407215
Score = 297 bits (328), Expect = 3e-78
Identities = 225/261 (86%), Gaps = 6/261 (2%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 26444574 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 26444633
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119
|||||||||||||||||||||| | | || |||| | |||||||||||||||||| |
Sbjct 26444634 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 26444691
Query 120 CCACCAACCA-TAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177
|| | || || | |||| |||||||| | |||||||||||||||||||||
Sbjct 26444692 CCGTGGAGATGTACATCCACATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTATCGGAA 26444751
Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 26444752 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 26444811
Query 238 AGAAAGAGCTATCAATCTGTC 258
|||||||||| ||| ||||||
Sbjct 26444812 AGAAAGAGCTCTCAGTCTGTC 26444832
Score = 269 bits (298), Expect = 4e-70
Identities = 219/261 (84%), Gaps = 6/261 (2%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | ||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 26558224 ACTCGTTGAATACATCAGTATAGCGCGTGTGCGGCCCAGAACATCTAAGGGCATCACAGA 26558283
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119
||| |||||||| ||||||||| | | || |||| | ||| |||||||||||| | |
Sbjct 26558284 CCTATTATTGCCCCAAACTTCCTTGGACT--AAGCGGCCATAATCCCTCTAAGAAACTGG 26558341
Query 120 CCACCAACCA-TAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177
|| | || || || |||| |||||||| | |||||||||||||||||||||
Sbjct 26558342 CCGTGGAGATGTACATCCATATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTATCGGAA 26558401
Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 26558402 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 26558461
Query 238 AGAAAGAGCTATCAATCTGTC 258
|||||||||| ||| ||| ||
Sbjct 26558462 AGAAAGAGCTCTCAGTCTATC 26558482
Score = 255 bits (282), Expect = 9e-66
Identities = 220/261 (84%), Gaps = 11/261 (4%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 26397280 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGG-CATCACAGA 26397338
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119
|||||||||||||||| ||||| | | || |||| | |||||||||||||||||| |
Sbjct 26397339 CCTGTTATTGCCTCAA-CTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 26397395
Query 120 CCACCAACCA-TAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177
|| | || || | |||| ||||||| | | ||||||||||||||||||||
Sbjct 26397396 CCGTGGAGATGTACATCCACATAGCTAGTTAGCAGCTGA-GGTCTCGTTCGTTATCGGAA 26397454
Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 26397455 TTAACCAGACAA-TCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 26397513
Query 238 AGAAAGAGCTATCAATCTGTC 258
|| ||||||| ||| ||||||
Sbjct 26397514 AG-AAGAGCTCTCAGTCTGTC 26397533
>seq17
Length=836409
Score = 291 bits (322), Expect = 1e-76
Identities = 224/261 (86%), Gaps = 6/261 (2%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 22158 ACTCGTTGAATACATCAATGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 22099
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119
|||||||||||||||||||||| | | || |||| | |||||||||||||||||| |
Sbjct 22098 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 22041
Query 120 CCACCAACCA-TAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177
|| | || || | |||| |||||||| | |||||||||||||||||||||
Sbjct 22040 CCGTGGAGATGTACATCCACATAGCTACTTAGCAGGCTGAGGTCTCGTTCGTTATCGGAA 21981
Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 21980 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 21921
Query 238 AGAAAGAGCTATCAATCTGTC 258
|||||||||| ||| ||||||
Sbjct 21920 AGAAAGAGCTCTCAGTCTGTC 21900
>seq7
Length=52445601
Score = 273 bits (302), Expect = 3e-71
Identities = 221/261 (85%), Gaps = 6/261 (2%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | |||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 37651889 ACTCGTTGAATACATCAGTGTAGCACGCATGCGGCCCAGAACATCTAAGGGCATCACAGA 37651830
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119
|||||| ||||||||||||||| |||||| |||| | |||||||||||||||||| |
Sbjct 37651829 CCTGTTGTTGCCTCAAACTTCC-TTGGCTT-AAGCGGCCATAGTCCCTCTAAGAAGCTGG 37651772
Query 120 CCACCAACCA-TAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177
| | || || | |||| |||||||| | |||||||||||||||||||||
Sbjct 37651771 TCGTGGAGATGTACATCCACATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTATCGGAA 37651712
Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 37651711 TTAACCAGACAAATCGCTCCACCAACTAAGAACGACCATGCACCACCACCCATAGAATCA 37651652
Query 238 AGAAAGAGCTATCAATCTGTC 258
|||||||||| ||| | ||||
Sbjct 37651651 AGAAAGAGCTCTCAGTTTGTC 37651631
Score = 158 bits (174), Expect = 2e-36
Identities = 105/117 (90%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200
|||| |||||||| |||||||| |||| | ||| ||||||||||||| |||||||||||
Sbjct 25557800 GCTAGTTAGCAGGCTAAGGTCTTGTTCATGGTCGAAATTAACCAGACAGATCACTCCACC 25557741
Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257
||||||||| ||||||||||||||||||||||||| |||||||||| |||| |||||
Sbjct 25557740 AACTAAGAATGGCCATGCACCACCACCCATAGAATTAAGAAAGAGCCATCAGTCTGT 25557684
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796761783231
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |