Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq4951 183 6e-44 seq5 116 7e-24 seq2692 105 1e-20 seq11 93.3 8e-17 seq10 93.3 8e-17 seq8 86.0 1e-14 seq9 78.8 2e-12 seq2 75.2 2e-11 >seq4951 Length=160137 Score = 183 bits (202), Expect = 6e-44 Identities = 180/230 (78%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 111693 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 111752 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | ||| ||| | || | | |||||||||||| ||||| Sbjct 111753 GTGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 111811 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| ||| Sbjct 111812 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 111871 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 111872 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 111921 Score = 183 bits (202), Expect = 6e-44 Identities = 180/230 (78%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 137317 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 137258 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | ||| ||| | || | | |||||||||||| ||||| Sbjct 137257 GTGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 137199 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| ||| Sbjct 137198 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 137139 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 137138 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 137089 >seq5 Length=74729908 Score = 116 bits (128), Expect = 7e-24 Identities = 103/129 (80%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 |||||||||||| || || | ||||| || | | || | ||| ||||||||||||||| Sbjct 4178360 AGTGCAAAGGCAGAAAGGAGCTTGACAGCAAGATCCACCCGTCGAGCAGGGACGAAAGTT 4178301 Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330 || |||| | || || |||||| || || || ||||||||||| ||||||||||| ||| Sbjct 4178300 GGCCTTAGTAATTCGACGGTGCCGAGTGAAAGGGCCGTCGCTCAACGGATAAAAGTTACT 4178241 Query 331 CTGGGGATA 339 || |||||| Sbjct 4178240 CTAGGGATA 4178232 >seq2692 Length=5035 Score = 105 bits (116), Expect = 1e-20 Identities = 134/178 (75%), Gaps = 5/178 (3%) Strand=Plus/Plus Query 150 CTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTC-AGCTTGGATGGAAACCATGCGC 208 |||||||| |||| ||||||| ||||| | ||| |||||| || || | || | Sbjct 4639 CTCCCAAAAGGTAATGGAGGCGTGCAAAGGTTTTCTCGAGCTTG-ATAGAGATTG-GCCC 4696 Query 209 AC-AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAA 267 | |||||||||||| ||||| | |||| ||| | |||| | ||| ||| |||| ||| Sbjct 4697 TCGAGTGCAAAGGCAGAAGGGAGCTTGATTGCAAGACCCACCCGTCGAGCGAGGAC-AAA 4755 Query 268 GTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAG 325 || || |||| ||||||| | |||||| ||||| ||| || |||| ||||||||||| Sbjct 4756 GTTGGCCTTAGTGATCCGACAATGCTGAGTGGAAGGGCAGTTGCTCAACGGATAAAAG 4813 >seq11 Length=45509462 Score = 93.3 bits (102), Expect = 8e-17 Identities = 117/158 (74%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 6069054 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 6068995 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | ||| ||| | || | | |||||||||| | ||||| Sbjct 6068994 GTGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGTAGAAGGGA 6068936 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAA 267 | |||||||| | |||| | ||| ||||||||||||| Sbjct 6068935 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAA 6068898 Score = 75.2 bits (82), Expect = 2e-11 Identities = 107/144 (74%), Gaps = 5/144 (3%) Strand=Plus/Plus Query 148 GCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTC-AGCTTGGATGGAAACCATGC 206 || ||||||| ||||||||||||| || || | ||| ||| ||||||| | || Sbjct 19103123 GCATCCCAAAAAGTAACGGAGGCGTGCAGAGGTTTCCTTGAGCC-GGATGGAGATTG-GC 19103180 Query 207 GCACA-GTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGA 265 | || ||||| ||| ||||||| | |||||||| | | || | || ||||| |||| Sbjct 19103181 CCTCAAGTGCACAGGAAAAAGGGAGCTTGACTGCAAGATCCACCTATCGTGCAGG-ACGA 19103239 Query 266 AAGTCGGGCTTAATGATCCGGCGG 289 ||||||| |||| ||||||| ||| Sbjct 19103240 AAGTCGGCCTTAGTGATCCGACGG 19103263 >seq10 Length=39358841 Score = 93.3 bits (102), Expect = 8e-17 Identities = 143/203 (70%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 138 TGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCA-GCTTGGATG 196 |||||||| |||||| ||||||||||||||| | | ||| || |||| ||| ||| Sbjct 25771724 TGGGGCGGATGCCTCCTAAAGAGTAACGGAGGTGTGCGAAGGTAGGCTCAAGCTAAGATT 25771665 Query 197 GAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAG 256 | || || | || || | ||| || |||||| || ||| | ||| | Sbjct 25771664 CTGCTCGTGAGC-----GTAATGGTATAAGCCTGCCTGACTGTGAGACCGACTGGTCGAA 25771610 Query 257 CAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGAC 316 ||| |||||||||||| | || |||||||| || | | ||||| ||| |||||| || Sbjct 25771609 CAGAGACGAAAGTCGGCCATAGTGATCCGGGAGTCCCGTGTGGAAGGGCTCTCGCTCAAC 25771550 Query 317 GGATAAAAGCTACCCTGGGGATA 339 |||| |||| ||| | ||||||| Sbjct 25771549 GGATCAAAGGTACGCCGGGGATA 25771527 >seq8 Length=74329289 Score = 86.0 bits (94), Expect = 1e-14 Identities = 113/153 (74%), Gaps = 3/153 (2%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 28729170 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 28729229 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | ||| ||| | || | | |||||||||||| ||||| Sbjct 28729230 GTGCAAAGGTTTCCTCGGGCCGGACGGAGA-TTGGCCCTCGAGTGCAAAGGCAGAAGGGA 28729288 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGA 262 | |||||||| | |||| | | || |||||||| Sbjct 28729289 GCTTGACTGCAAGACCC-CGACTCGAGCAGGGA 28729320 >seq9 Length=39018107 Score = 78.8 bits (86), Expect = 2e-12 Identities = 135/191 (71%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 149 CCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGC 208 |||||||||| ||||||||||| ||||| | ||| | | |||| || | | || | Sbjct 8345392 CCTCCCAAAG-GTAACGGAGGCATGCAAAGGTTTTCTCGGGTCGGATAGAGATTA-GCCC 8345449 Query 209 AC-AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAA 267 | |||||| ||| || || | |||| ||| | |||| || |||||||| |||| Sbjct 8345450 TCGAGTGCAGAGGTGGAAAGGAGCTTGAGTGCAAGACCCAACCATCGAGCAGGGATGAAA 8345509 Query 268 GTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCT 327 || | |||| |||||| | ||| || ||||| ||| | |||| || ||||||| | Sbjct 8345510 ATCAGTCTTAGTGATCCAACAATGCCGAGTGGAA-AGCCATTGCTCAACAGATAAAATTT 8345568 Query 328 ACCCTGGGGAT 338 | |||||||| Sbjct 8345569 ATTCTGGGGAT 8345579 >seq2 Length=64235786 Score = 75.2 bits (82), Expect = 2e-11 Identities = 53/61 (87%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 279 TGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGAT 338 ||||||| |||||| || ||||| ||||||||||| ||||||||||| ||| || ||||| Sbjct 28619601 TGATCCGACGGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGAT 28619542 Query 339 A 339 | Sbjct 28619541 A 28619541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982351361376