Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02]
4,951 sequences; 691,429,809 total letters
Query= AAMG01001083.1
Length=339
Score E
Sequences producing significant alignments: (Bits) Value
seq4951 183 6e-44
seq5 116 7e-24
seq2692 105 1e-20
seq11 93.3 8e-17
seq10 93.3 8e-17
seq8 86.0 1e-14
seq9 78.8 2e-12
seq2 75.2 2e-11
>seq4951
Length=160137
Score = 183 bits (202), Expect = 6e-44
Identities = 180/230 (78%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170
|||||||| |||| | |||||| ||||||| |||||||||| |||||||||||
Sbjct 111693 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 111752
Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229
| ||||| | |||| | ||| ||| | || | | |||||||||||| |||||
Sbjct 111753 GTGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 111811
Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289
| |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| |||
Sbjct 111812 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 111871
Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
||| || ||||| ||||||||||| ||||||||||| ||| || ||||||
Sbjct 111872 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 111921
Score = 183 bits (202), Expect = 6e-44
Identities = 180/230 (78%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170
|||||||| |||| | |||||| ||||||| |||||||||| |||||||||||
Sbjct 137317 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 137258
Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229
| ||||| | |||| | ||| ||| | || | | |||||||||||| |||||
Sbjct 137257 GTGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 137199
Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289
| |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| |||
Sbjct 137198 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 137139
Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
||| || ||||| ||||||||||| ||||||||||| ||| || ||||||
Sbjct 137138 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 137089
>seq5
Length=74729908
Score = 116 bits (128), Expect = 7e-24
Identities = 103/129 (80%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270
|||||||||||| || || | ||||| || | | || | ||| |||||||||||||||
Sbjct 4178360 AGTGCAAAGGCAGAAAGGAGCTTGACAGCAAGATCCACCCGTCGAGCAGGGACGAAAGTT 4178301
Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330
|| |||| | || || |||||| || || || ||||||||||| ||||||||||| |||
Sbjct 4178300 GGCCTTAGTAATTCGACGGTGCCGAGTGAAAGGGCCGTCGCTCAACGGATAAAAGTTACT 4178241
Query 331 CTGGGGATA 339
|| ||||||
Sbjct 4178240 CTAGGGATA 4178232
>seq2692
Length=5035
Score = 105 bits (116), Expect = 1e-20
Identities = 134/178 (75%), Gaps = 5/178 (3%)
Strand=Plus/Plus
Query 150 CTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTC-AGCTTGGATGGAAACCATGCGC 208
|||||||| |||| ||||||| ||||| | ||| |||||| || || | || |
Sbjct 4639 CTCCCAAAAGGTAATGGAGGCGTGCAAAGGTTTTCTCGAGCTTG-ATAGAGATTG-GCCC 4696
Query 209 AC-AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAA 267
| |||||||||||| ||||| | |||| ||| | |||| | ||| ||| |||| |||
Sbjct 4697 TCGAGTGCAAAGGCAGAAGGGAGCTTGATTGCAAGACCCACCCGTCGAGCGAGGAC-AAA 4755
Query 268 GTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAG 325
|| || |||| ||||||| | |||||| ||||| ||| || |||| |||||||||||
Sbjct 4756 GTTGGCCTTAGTGATCCGACAATGCTGAGTGGAAGGGCAGTTGCTCAACGGATAAAAG 4813
>seq11
Length=45509462
Score = 93.3 bits (102), Expect = 8e-17
Identities = 117/158 (74%), Gaps = 2/158 (1%)
Strand=Plus/Minus
Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170
|||||||| |||| | |||||| ||||||| |||||||||| |||||||||||
Sbjct 6069054 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 6068995
Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229
| ||||| | |||| | ||| ||| | || | | |||||||||| | |||||
Sbjct 6068994 GTGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGTAGAAGGGA 6068936
Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAA 267
| |||||||| | |||| | ||| |||||||||||||
Sbjct 6068935 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAA 6068898
Score = 75.2 bits (82), Expect = 2e-11
Identities = 107/144 (74%), Gaps = 5/144 (3%)
Strand=Plus/Plus
Query 148 GCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTC-AGCTTGGATGGAAACCATGC 206
|| ||||||| ||||||||||||| || || | ||| ||| ||||||| | ||
Sbjct 19103123 GCATCCCAAAAAGTAACGGAGGCGTGCAGAGGTTTCCTTGAGCC-GGATGGAGATTG-GC 19103180
Query 207 GCACA-GTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGA 265
| || ||||| ||| ||||||| | |||||||| | | || | || ||||| ||||
Sbjct 19103181 CCTCAAGTGCACAGGAAAAAGGGAGCTTGACTGCAAGATCCACCTATCGTGCAGG-ACGA 19103239
Query 266 AAGTCGGGCTTAATGATCCGGCGG 289
||||||| |||| ||||||| |||
Sbjct 19103240 AAGTCGGCCTTAGTGATCCGACGG 19103263
>seq10
Length=39358841
Score = 93.3 bits (102), Expect = 8e-17
Identities = 143/203 (70%), Gaps = 6/203 (3%)
Strand=Plus/Minus
Query 138 TGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCA-GCTTGGATG 196
|||||||| |||||| ||||||||||||||| | | ||| || |||| ||| |||
Sbjct 25771724 TGGGGCGGATGCCTCCTAAAGAGTAACGGAGGTGTGCGAAGGTAGGCTCAAGCTAAGATT 25771665
Query 197 GAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAG 256
| || || | || || | ||| || |||||| || ||| | ||| |
Sbjct 25771664 CTGCTCGTGAGC-----GTAATGGTATAAGCCTGCCTGACTGTGAGACCGACTGGTCGAA 25771610
Query 257 CAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGAC 316
||| |||||||||||| | || |||||||| || | | ||||| ||| |||||| ||
Sbjct 25771609 CAGAGACGAAAGTCGGCCATAGTGATCCGGGAGTCCCGTGTGGAAGGGCTCTCGCTCAAC 25771550
Query 317 GGATAAAAGCTACCCTGGGGATA 339
|||| |||| ||| | |||||||
Sbjct 25771549 GGATCAAAGGTACGCCGGGGATA 25771527
>seq8
Length=74329289
Score = 86.0 bits (94), Expect = 1e-14
Identities = 113/153 (74%), Gaps = 3/153 (2%)
Strand=Plus/Plus
Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170
|||||||| |||| | |||||| ||||||| |||||||||| |||||||||||
Sbjct 28729170 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 28729229
Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229
| ||||| | |||| | ||| ||| | || | | |||||||||||| |||||
Sbjct 28729230 GTGCAAAGGTTTCCTCGGGCCGGACGGAGA-TTGGCCCTCGAGTGCAAAGGCAGAAGGGA 28729288
Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGA 262
| |||||||| | |||| | | || ||||||||
Sbjct 28729289 GCTTGACTGCAAGACCC-CGACTCGAGCAGGGA 28729320
>seq9
Length=39018107
Score = 78.8 bits (86), Expect = 2e-12
Identities = 135/191 (71%), Gaps = 4/191 (2%)
Strand=Plus/Plus
Query 149 CCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGC 208
|||||||||| ||||||||||| ||||| | ||| | | |||| || | | || |
Sbjct 8345392 CCTCCCAAAG-GTAACGGAGGCATGCAAAGGTTTTCTCGGGTCGGATAGAGATTA-GCCC 8345449
Query 209 AC-AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAA 267
| |||||| ||| || || | |||| ||| | |||| || |||||||| ||||
Sbjct 8345450 TCGAGTGCAGAGGTGGAAAGGAGCTTGAGTGCAAGACCCAACCATCGAGCAGGGATGAAA 8345509
Query 268 GTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCT 327
|| | |||| |||||| | ||| || ||||| ||| | |||| || ||||||| |
Sbjct 8345510 ATCAGTCTTAGTGATCCAACAATGCCGAGTGGAA-AGCCATTGCTCAACAGATAAAATTT 8345568
Query 328 ACCCTGGGGAT 338
| ||||||||
Sbjct 8345569 ATTCTGGGGAT 8345579
>seq2
Length=64235786
Score = 75.2 bits (82), Expect = 2e-11
Identities = 53/61 (87%), Gaps = 0/61 (0%)
Strand=Plus/Minus
Query 279 TGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGAT 338
||||||| |||||| || ||||| ||||||||||| ||||||||||| ||| || |||||
Sbjct 28619601 TGATCCGACGGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGAT 28619542
Query 339 A 339
|
Sbjct 28619541 A 28619541
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 982351361376
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |