Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq4951 105 7e-21 seq9 75.2 1e-11 >seq4951 Length=160137 Score = 105 bits (116), Expect = 7e-21 Identities = 113/152 (74%), Gaps = 6/152 (4%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || |||| || |||||||||| || | | ||||||| ||| Sbjct 111533 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 111474 Query 85 ---CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACC 141 ||| | | |||||| ||| || ||||||| |||||||||||||| Sbjct 111473 TTTCTCTCCG---AGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACC 111417 Query 142 CGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||||| Sbjct 111416 CGACAAGGAATTTCGCTACCTTAGGACCGTTA 111385 Score = 105 bits (116), Expect = 7e-21 Identities = 113/152 (74%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || |||| || |||||||||| || | | ||||||| ||| Sbjct 137477 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 137536 Query 85 ---CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACC 141 ||| | | |||||| ||| || ||||||| |||||||||||||| Sbjct 137537 TTTCTCTCCG---AGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACC 137593 Query 142 CGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||||| Sbjct 137594 CGACAAGGAATTTCGCTACCTTAGGACCGTTA 137625 >seq9 Length=39018107 Score = 75.2 bits (82), Expect = 1e-11 Identities = 53/61 (87%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 |||||| |||||||||||||||||||| ||||||||||||| ||| ||||||| ||| Sbjct 8345108 TACACCTTTCGTGCAGGTCGGAACTTATATGACAAGGAATTTCACTAATTTAGGACTGTT 8345049 Query 173 A 173 | Sbjct 8345048 A 8345048 Score = 73.4 bits (80), Expect = 4e-11 Identities = 52/60 (87%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| || ||| ||| |||| ||||||||| ||||||||||||||||||||| ||| |||| Sbjct 28431884 TACGCCTTTCATGCGGGTCAGAACTTACCTGACAAGGAATTTCGCTACCTTTGGATCGTT 28431825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547173754749