Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02]
4,951 sequences; 691,429,809 total letters
Query= AAMG01001178.1
Length=367
Score E
Sequences producing significant alignments: (Bits) Value
seq4951 226 6e-57
seq9 203 7e-50
seq320 194 4e-47
seq5 187 5e-45
seq2 172 1e-40
seq11 163 6e-38
seq3 147 5e-33
seq549 141 2e-31
seq23 131 4e-28
seq7 131 4e-28
seq6 100 6e-19
>seq4951
Length=160137
Score = 226 bits (250), Expect = 6e-57
Identities = 240/310 (77%), Gaps = 20/310 (6%)
Strand=Plus/Minus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
|||||||||||| || |||||||||||||||||| || ||||||||||||||||||
Sbjct 105921 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 105863
Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148
|||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| |
Sbjct 105862 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 105803
Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC-CTAGGCTCA 207
|| |||| |||||||||| ||| ||| ||||||||||||||||||| ||| | || | |
Sbjct 105802 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCT 105743
Query 208 TCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAG 267
|| || ||| || ||| |||| | | | | | || | ||||||||
Sbjct 105742 CCT-----CG---GGC-----GGATTCCTCCTTTTGCTCCTCAG-CCTACGGGGTATTAG 105697
Query 268 CGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCC 325
| |||||||| ||| | ||| || ||| ||||| ||| || || ||||||||||
Sbjct 105696 CAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCACCC 105639
Query 326 GTCCGCCGCT 335
||||||| ||
Sbjct 105638 GTCCGCCACT 105629
Score = 226 bits (250), Expect = 6e-57
Identities = 240/310 (77%), Gaps = 20/310 (6%)
Strand=Plus/Plus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
|||||||||||| || |||||||||||||||||| || ||||||||||||||||||
Sbjct 143089 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 143147
Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148
|||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| |
Sbjct 143148 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 143207
Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC-CTAGGCTCA 207
|| |||| |||||||||| ||| ||| ||||||||||||||||||| ||| | || | |
Sbjct 143208 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCT 143267
Query 208 TCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAG 267
|| || ||| || ||| |||| | | | | | || | ||||||||
Sbjct 143268 CCT-----CG---GGC-----GGATTCCTCCTTTTGCTCCTCAG-CCTACGGGGTATTAG 143313
Query 268 CGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCC 325
| |||||||| ||| | ||| || ||| ||||| ||| || || ||||||||||
Sbjct 143314 CAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCACCC 143371
Query 326 GTCCGCCGCT 335
||||||| ||
Sbjct 143372 GTCCGCCACT 143381
>seq9
Length=39018107
Score = 203 bits (224), Expect = 7e-50
Identities = 236/310 (76%), Gaps = 24/310 (8%)
Strand=Plus/Minus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
|||||||||||| | ||||||||||||| |||| || |||||||||||| |||||
Sbjct 28456785 CACGCGGCATTGTCG---TCAGGCTTTCGCC-ATTGCGGAAAATTCCCCACTGC-GCCTC 28456731
Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148
|||||||||||||| |||||| ||||| |||||||| |||||||||||||| |||||| |
Sbjct 28456730 CCGTAGGAGTCTGGGCCGTGTATCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 28456671
Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC-CTAGGCTCA 207
|| |||| |||||||||| ||| ||| ||||||||||||||||||| ||| | || | |
Sbjct 28456670 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCT 28456611
Query 208 TCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAG 267
|| || ||| || ||| |||| | | | | | || | ||||||||
Sbjct 28456610 CCT-----CG---GGC-----GGATTCCTCCTTTTGCTCCTCAG-CCTACGGGGTATTAG 28456565
Query 268 CGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCC 325
| |||||||| ||| | ||| || ||| ||||| ||| || || ||||||||||
Sbjct 28456564 CAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCACCC 28456507
Query 326 GTCCGCCGCT 335
||||||| ||
Sbjct 28456506 GTCCGCCACT 28456497
Score = 134 bits (148), Expect = 3e-29
Identities = 147/189 (78%), Gaps = 5/189 (3%)
Strand=Plus/Minus
Query 8 ATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCC 67
||||| || | |||| | || ||| |||||| | | ||| ||||| |||||||||
Sbjct 8339758 ATCCGGAG-CTTTCTACCTCA-ACGTGGCATTAATTCG-TCAAGCTTTTGCCCATTGTGG 8339702
Query 68 AATATTCCCC-ACTG-CTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGA 125
| ||||||| ||| ||||||| ||| |||||||| | || ||||||| | ||||||
Sbjct 8339701 GAAATTCCCCCACTAACTGCCTCTTGTAAGAGTCTGGGCTGTATCTCAGTCCTAGTGTGG 8339642
Query 126 CTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAAC 185
||||||||||||| |||||| ||| |||| || |||||| ||| ||| ||| ||||||
Sbjct 8339641 TTGATCATCCTCTCGGACCAGCTACTGATCATCATCTTGGTAAGCTATTGCCTTACCAAC 8339582
Query 186 TAGCTAATC 194
|||||||||
Sbjct 8339581 TAGCTAATC 8339573
>seq320
Length=36444
Score = 194 bits (214), Expect = 4e-47
Identities = 162/196 (83%), Gaps = 2/196 (1%)
Strand=Plus/Minus
Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61
|| |||| ||| | |||||| | | |||||||||||| || |||||||||| ||||
Sbjct 25512 TTCACAACCCGTGGGCCTTCTACCTC-CACGCGGCATTG-CTCCGTCAGGCTTTCACCCA 25455
Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121
||| || |||||||||| ||||||| ||||||||||||| |||||||||||| | |||
Sbjct 25454 TTGCGGAAAATTCCCCACTACTGCCTCTCGTAGGAGTCTGGGCCGTGTCTCAGTCCTAGT 25395
Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181
||| ||||||||||||||||||||| ||| ||| |||||||||| || || ||||||
Sbjct 25394 GTGGCTGATCATCCTCTCAGACCAGCTACTAATCATCGCCTTGGTAAGTTATCGCCTCAC 25335
Query 182 CAACTAGCTAATCCGA 197
||||||||||||| ||
Sbjct 25334 CAACTAGCTAATCAGA 25319
>seq5
Length=74729908
Score = 187 bits (206), Expect = 5e-45
Identities = 141/165 (85%), Gaps = 1/165 (1%)
Strand=Plus/Plus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
|||||||||||| || ||||||||||||||||||| || ||||||||||||||||||
Sbjct 8711758 CACGCGGCATTG-CTCCATCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 8711816
Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148
||||||||| ||| || ||| ||||| | |||||| ||||||||||||||||||||| |
Sbjct 8711817 TCGTAGGAGTTTGGGCCATGTATCAGTCCTAGTGTGGCTGATCATCCTCTCAGACCAGCT 8711876
Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAAT 193
|| ||| |||||||||| || || ||||||||||||||||||
Sbjct 8711877 ACTAATCATCGCCTTGGTAAGTTATCGCCTCACCAACTAGCTAAT 8711921
Score = 86.0 bits (94), Expect = 1e-14
Identities = 67/79 (85%), Gaps = 1/79 (1%)
Strand=Plus/Minus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
|||||||||||| | ||||||||||| | |||||| || ||||||||||| ||||||
Sbjct 11597050 CACGCGGCATTGT-TCCATCAGGCTTTCACTCATTGTGGAAAATTCCCCACTGTTGCCTC 11596992
Query 89 CCGTAGGAGTCTGGACCGT 107
|||||||||| ||| ||||
Sbjct 11596991 CCGTAGGAGTATGGGCCGT 11596973
>seq2
Length=64235786
Score = 172 bits (190), Expect = 1e-40
Identities = 212/287 (74%), Gaps = 17/287 (6%)
Strand=Plus/Minus
Query 47 TCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 106
|||||||||| ||||||| || |||||||||| || |||||||||||||||| | |||
Sbjct 46887956 TCAGGCTTTCACCCATTGCGGAAAATTCCCCACTACTACCTCCCGTAGGAGTCTAGGCCG 46887897
Query 107 TGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGT 166
|| || | | |||||||| ||||||||||||| |||||||||| |||| ||||||||||
Sbjct 46887896 TGCCTTAATCCCAGTGTGGCTGATCATCCTCTTGGACCAGTTACTGATCATCGCCTTGGT 46887837
Query 167 GAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCG 226
||| ||| |||||||||||| |||||| | | || | || | || | |
Sbjct 46887836 AAGCTATTGCCTCACCAACTAACTAATCAGTCGCGAGCCCCTC--------CTTGGGCGG 46887785
Query 227 AAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTA 286
| ||| || || |||| || || | ||||||||| || ||||| | |||
Sbjct 46887784 A--TTCCTCTTTTTGCTCC---TCAACCTACGGGGTATTAGCAGCCATTTCCAACTGTTG 46887730
Query 287 TCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCCGTCCGC 331
| ||| || ||| ||||| ||| || || ||||||||||||||||
Sbjct 46887729 TTCCC--CTCCCAAGGGCAGGTTCTTATGCGTTACTCACCCGTCCGC 46887685
>seq11
Length=45509462
Score = 163 bits (180), Expect = 6e-38
Identities = 107/118 (91%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 81 GCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCA 140
|||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||
Sbjct 19770425 GCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCG 19770484
Query 141 GACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198
|||||| ||| |||| |||||||||| ||| ||| ||||||||||||||||||| |||
Sbjct 19770485 GACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGAC 19770542
>seq3
Length=80079441
Score = 147 bits (162), Expect = 5e-33
Identities = 108/126 (86%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 68 AATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACT 127
|| ||||||||||||| |||||| ||||||||||| |||||||||||| ||| |||| ||
Sbjct 55014269 AAAATTCCCCACTGCTACCTCCCATAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCT 55014210
Query 128 GATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTA 187
|||||||||||| ||| || || |||| || ||||||| ||| || ||||||||||||
Sbjct 55014209 GATCATCCTCTCGGACTAGCTATTGATCATCACCTTGGTAAGCTATGGCCTCACCAACTA 55014150
Query 188 GCTAAT 193
||||||
Sbjct 55014149 GCTAAT 55014144
Score = 116 bits (128), Expect = 8e-24
Identities = 87/101 (86%), Gaps = 1/101 (1%)
Strand=Plus/Plus
Query 34 GGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTA 93
||||||| || |||||||||| ||||||| || |||||||||||||||||||||||
Sbjct 16238546 GGCATTG-CTCCGTCAGGCTTTCACCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTA 16238604
Query 94 GGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATC 134
|||||||| |||||||||| | |||||||| |||||||||
Sbjct 16238605 TGAGTCTGGGCCGTGTCTCACTCCCAGTGTGGCTGATCATC 16238645
>seq549
Length=23015
Score = 141 bits (156), Expect = 2e-31
Identities = 107/126 (85%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 68 AATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACT 127
|| ||||||||||||| ||||| ||||||||||| || ||||||||| |||||||| ||
Sbjct 13739 AAAATTCCCCACTGCTACCTCCTATAGGAGTCTGGGCCATGTCTCAGTCCCAGTGTGGCT 13798
Query 128 GATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTA 187
|||||||||||| ||| || || |||| |||||||||| || || ||||||||||||
Sbjct 13799 GATCATCCTCTCGGACTAGCTATCGATCATCGCCTTGGTAAGTTATGGCCTCACCAACTA 13858
Query 188 GCTAAT 193
||||||
Sbjct 13859 GCTAAT 13864
>seq23
Length=625428
Score = 131 bits (144), Expect = 4e-28
Identities = 116/145 (80%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 53 TTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTC 112
||| |||||||| || |||||||| | ||||||||||||||||||||| | |||||||
Sbjct 541615 TTTTGCCCATTGCGGAAAATTCCCCATTACTGCCTCCCGTAGGAGTCTGGGCTGTGTCTC 541556
Query 113 AGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCA 172
|| |||||||||| |||||||| |||||| || ||| ||| | | |||| | |||
Sbjct 541555 AGCCCCAGTGTGACCAATCATCCTTTCAGACTAGCTACTGATTATTGGCTTGTTAAGCTG 541496
Query 173 TTACCTCACCAACTAGCTAATCCGA 197
|| |||||||||||| ||||| ||
Sbjct 541495 TTGCCTCACCAACTAATTAATCAGA 541471
>seq7
Length=52445601
Score = 131 bits (144), Expect = 4e-28
Identities = 126/162 (78%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 57 GCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTT 116
||||||||||||| |||||||||||||||| ||||| ||||| | | ||||||||||
Sbjct 51753486 GCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGAGAGTCCAGGCTGTGTCTCAGTC 51753545
Query 117 CCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTAC 176
||| |||| ||||||||| || |||| || | ||| | | |||||| |||| || |
Sbjct 51753546 CCATTGTGGCTGATCATCTGAAAAGGCCAGCTAAGCATCATTGGCTTGGTCAGCCTTTGC 51753605
Query 177 CTCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218
|| | |||||| ||||| | || ||||||||| | |||||
Sbjct 51753606 CTGATCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 51753647
>seq6
Length=53892272
Score = 100 bits (110), Expect = 6e-19
Identities = 141/193 (73%), Gaps = 4/193 (2%)
Strand=Plus/Minus
Query 2 TTTACAATCCGAAGACCTTCTT-TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60
|| |||| || || |||| || || | ||| ||||||| || ||||||||| |||
Sbjct 50165273 TTCACAACCCATAGGCCTTTTTATCTC-CACATGGCATTG-CTCTGTCAGGCTTTT-CCC 50165217
Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120
||||| || |||||| || | |||||| | ||||||| ||| | |||||| | |||
Sbjct 50165216 ATTGTGAAAAATTCCCTACCGTTGCCTCTCATAGGAGTTTGGGTCATGTCTCCATCCCAA 50165157
Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180
| || |||||||| || || ||| || ||| ||| |||||| || | || |||||
Sbjct 50165156 TATGGCTGATCATTCTTTCGGACTAGCTACTAATCATCGCCTCAGTACACTATAGCCTCA 50165097
Query 181 CCAACTAGCTAAT 193
| |||||||||||
Sbjct 50165096 CTAACTAGCTAAT 50165084
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1071946925280
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