Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq4951 226 6e-57 seq9 203 7e-50 seq320 194 4e-47 seq5 187 5e-45 seq2 172 1e-40 seq11 163 6e-38 seq3 147 5e-33 seq549 141 2e-31 seq23 131 4e-28 seq7 131 4e-28 seq6 100 6e-19 >seq4951 Length=160137 Score = 226 bits (250), Expect = 6e-57 Identities = 240/310 (77%), Gaps = 20/310 (6%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 105921 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 105863 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 105862 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 105803 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC-CTAGGCTCA 207 || |||| |||||||||| ||| ||| ||||||||||||||||||| ||| | || | | Sbjct 105802 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCT 105743 Query 208 TCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAG 267 || || ||| || ||| |||| | | | | | || | |||||||| Sbjct 105742 CCT-----CG---GGC-----GGATTCCTCCTTTTGCTCCTCAG-CCTACGGGGTATTAG 105697 Query 268 CGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCC 325 | |||||||| ||| | ||| || ||| ||||| ||| || || |||||||||| Sbjct 105696 CAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCACCC 105639 Query 326 GTCCGCCGCT 335 ||||||| || Sbjct 105638 GTCCGCCACT 105629 Score = 226 bits (250), Expect = 6e-57 Identities = 240/310 (77%), Gaps = 20/310 (6%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 143089 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 143147 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 143148 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 143207 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC-CTAGGCTCA 207 || |||| |||||||||| ||| ||| ||||||||||||||||||| ||| | || | | Sbjct 143208 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCT 143267 Query 208 TCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAG 267 || || ||| || ||| |||| | | | | | || | |||||||| Sbjct 143268 CCT-----CG---GGC-----GGATTCCTCCTTTTGCTCCTCAG-CCTACGGGGTATTAG 143313 Query 268 CGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCC 325 | |||||||| ||| | ||| || ||| ||||| ||| || || |||||||||| Sbjct 143314 CAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCACCC 143371 Query 326 GTCCGCCGCT 335 ||||||| || Sbjct 143372 GTCCGCCACT 143381 >seq9 Length=39018107 Score = 203 bits (224), Expect = 7e-50 Identities = 236/310 (76%), Gaps = 24/310 (8%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| | ||||||||||||| |||| || |||||||||||| ||||| Sbjct 28456785 CACGCGGCATTGTCG---TCAGGCTTTCGCC-ATTGCGGAAAATTCCCCACTGC-GCCTC 28456731 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||| ||||| |||||||| |||||||||||||| |||||| | Sbjct 28456730 CCGTAGGAGTCTGGGCCGTGTATCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 28456671 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC-CTAGGCTCA 207 || |||| |||||||||| ||| ||| ||||||||||||||||||| ||| | || | | Sbjct 28456670 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCT 28456611 Query 208 TCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAG 267 || || ||| || ||| |||| | | | | | || | |||||||| Sbjct 28456610 CCT-----CG---GGC-----GGATTCCTCCTTTTGCTCCTCAG-CCTACGGGGTATTAG 28456565 Query 268 CGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCC 325 | |||||||| ||| | ||| || ||| ||||| ||| || || |||||||||| Sbjct 28456564 CAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCACCC 28456507 Query 326 GTCCGCCGCT 335 ||||||| || Sbjct 28456506 GTCCGCCACT 28456497 Score = 134 bits (148), Expect = 3e-29 Identities = 147/189 (78%), Gaps = 5/189 (3%) Strand=Plus/Minus Query 8 ATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCC 67 ||||| || | |||| | || ||| |||||| | | ||| ||||| ||||||||| Sbjct 8339758 ATCCGGAG-CTTTCTACCTCA-ACGTGGCATTAATTCG-TCAAGCTTTTGCCCATTGTGG 8339702 Query 68 AATATTCCCC-ACTG-CTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGA 125 | ||||||| ||| ||||||| ||| |||||||| | || ||||||| | |||||| Sbjct 8339701 GAAATTCCCCCACTAACTGCCTCTTGTAAGAGTCTGGGCTGTATCTCAGTCCTAGTGTGG 8339642 Query 126 CTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAAC 185 ||||||||||||| |||||| ||| |||| || |||||| ||| ||| ||| |||||| Sbjct 8339641 TTGATCATCCTCTCGGACCAGCTACTGATCATCATCTTGGTAAGCTATTGCCTTACCAAC 8339582 Query 186 TAGCTAATC 194 ||||||||| Sbjct 8339581 TAGCTAATC 8339573 >seq320 Length=36444 Score = 194 bits (214), Expect = 4e-47 Identities = 162/196 (83%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 || |||| ||| | |||||| | | |||||||||||| || |||||||||| |||| Sbjct 25512 TTCACAACCCGTGGGCCTTCTACCTC-CACGCGGCATTG-CTCCGTCAGGCTTTCACCCA 25455 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| || |||||||||| ||||||| ||||||||||||| |||||||||||| | ||| Sbjct 25454 TTGCGGAAAATTCCCCACTACTGCCTCTCGTAGGAGTCTGGGCCGTGTCTCAGTCCTAGT 25395 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| ||||||||||||||||||||| ||| ||| |||||||||| || || |||||| Sbjct 25394 GTGGCTGATCATCCTCTCAGACCAGCTACTAATCATCGCCTTGGTAAGTTATCGCCTCAC 25335 Query 182 CAACTAGCTAATCCGA 197 ||||||||||||| || Sbjct 25334 CAACTAGCTAATCAGA 25319 >seq5 Length=74729908 Score = 187 bits (206), Expect = 5e-45 Identities = 141/165 (85%), Gaps = 1/165 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || ||||||||||||||||||| || |||||||||||||||||| Sbjct 8711758 CACGCGGCATTG-CTCCATCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 8711816 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 ||||||||| ||| || ||| ||||| | |||||| ||||||||||||||||||||| | Sbjct 8711817 TCGTAGGAGTTTGGGCCATGTATCAGTCCTAGTGTGGCTGATCATCCTCTCAGACCAGCT 8711876 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAAT 193 || ||| |||||||||| || || |||||||||||||||||| Sbjct 8711877 ACTAATCATCGCCTTGGTAAGTTATCGCCTCACCAACTAGCTAAT 8711921 Score = 86.0 bits (94), Expect = 1e-14 Identities = 67/79 (85%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| | ||||||||||| | |||||| || ||||||||||| |||||| Sbjct 11597050 CACGCGGCATTGT-TCCATCAGGCTTTCACTCATTGTGGAAAATTCCCCACTGTTGCCTC 11596992 Query 89 CCGTAGGAGTCTGGACCGT 107 |||||||||| ||| |||| Sbjct 11596991 CCGTAGGAGTATGGGCCGT 11596973 >seq2 Length=64235786 Score = 172 bits (190), Expect = 1e-40 Identities = 212/287 (74%), Gaps = 17/287 (6%) Strand=Plus/Minus Query 47 TCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 106 |||||||||| ||||||| || |||||||||| || |||||||||||||||| | ||| Sbjct 46887956 TCAGGCTTTCACCCATTGCGGAAAATTCCCCACTACTACCTCCCGTAGGAGTCTAGGCCG 46887897 Query 107 TGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGT 166 || || | | |||||||| ||||||||||||| |||||||||| |||| |||||||||| Sbjct 46887896 TGCCTTAATCCCAGTGTGGCTGATCATCCTCTTGGACCAGTTACTGATCATCGCCTTGGT 46887837 Query 167 GAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCG 226 ||| ||| |||||||||||| |||||| | | || | || | || | | Sbjct 46887836 AAGCTATTGCCTCACCAACTAACTAATCAGTCGCGAGCCCCTC--------CTTGGGCGG 46887785 Query 227 AAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTA 286 | ||| || || |||| || || | ||||||||| || ||||| | ||| Sbjct 46887784 A--TTCCTCTTTTTGCTCC---TCAACCTACGGGGTATTAGCAGCCATTTCCAACTGTTG 46887730 Query 287 TCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCCGTCCGC 331 | ||| || ||| ||||| ||| || || |||||||||||||||| Sbjct 46887729 TTCCC--CTCCCAAGGGCAGGTTCTTATGCGTTACTCACCCGTCCGC 46887685 >seq11 Length=45509462 Score = 163 bits (180), Expect = 6e-38 Identities = 107/118 (91%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 81 GCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCA 140 |||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||| Sbjct 19770425 GCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCG 19770484 Query 141 GACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 |||||| ||| |||| |||||||||| ||| ||| ||||||||||||||||||| ||| Sbjct 19770485 GACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGAC 19770542 >seq3 Length=80079441 Score = 147 bits (162), Expect = 5e-33 Identities = 108/126 (86%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 68 AATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACT 127 || ||||||||||||| |||||| ||||||||||| |||||||||||| ||| |||| || Sbjct 55014269 AAAATTCCCCACTGCTACCTCCCATAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCT 55014210 Query 128 GATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTA 187 |||||||||||| ||| || || |||| || ||||||| ||| || |||||||||||| Sbjct 55014209 GATCATCCTCTCGGACTAGCTATTGATCATCACCTTGGTAAGCTATGGCCTCACCAACTA 55014150 Query 188 GCTAAT 193 |||||| Sbjct 55014149 GCTAAT 55014144 Score = 116 bits (128), Expect = 8e-24 Identities = 87/101 (86%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 34 GGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTA 93 ||||||| || |||||||||| ||||||| || ||||||||||||||||||||||| Sbjct 16238546 GGCATTG-CTCCGTCAGGCTTTCACCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTA 16238604 Query 94 GGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATC 134 |||||||| |||||||||| | |||||||| ||||||||| Sbjct 16238605 TGAGTCTGGGCCGTGTCTCACTCCCAGTGTGGCTGATCATC 16238645 >seq549 Length=23015 Score = 141 bits (156), Expect = 2e-31 Identities = 107/126 (85%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 68 AATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACT 127 || ||||||||||||| ||||| ||||||||||| || ||||||||| |||||||| || Sbjct 13739 AAAATTCCCCACTGCTACCTCCTATAGGAGTCTGGGCCATGTCTCAGTCCCAGTGTGGCT 13798 Query 128 GATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTA 187 |||||||||||| ||| || || |||| |||||||||| || || |||||||||||| Sbjct 13799 GATCATCCTCTCGGACTAGCTATCGATCATCGCCTTGGTAAGTTATGGCCTCACCAACTA 13858 Query 188 GCTAAT 193 |||||| Sbjct 13859 GCTAAT 13864 >seq23 Length=625428 Score = 131 bits (144), Expect = 4e-28 Identities = 116/145 (80%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 53 TTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTC 112 ||| |||||||| || |||||||| | ||||||||||||||||||||| | ||||||| Sbjct 541615 TTTTGCCCATTGCGGAAAATTCCCCATTACTGCCTCCCGTAGGAGTCTGGGCTGTGTCTC 541556 Query 113 AGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCA 172 || |||||||||| |||||||| |||||| || ||| ||| | | |||| | ||| Sbjct 541555 AGCCCCAGTGTGACCAATCATCCTTTCAGACTAGCTACTGATTATTGGCTTGTTAAGCTG 541496 Query 173 TTACCTCACCAACTAGCTAATCCGA 197 || |||||||||||| ||||| || Sbjct 541495 TTGCCTCACCAACTAATTAATCAGA 541471 >seq7 Length=52445601 Score = 131 bits (144), Expect = 4e-28 Identities = 126/162 (78%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 57 GCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTT 116 ||||||||||||| |||||||||||||||| ||||| ||||| | | |||||||||| Sbjct 51753486 GCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGAGAGTCCAGGCTGTGTCTCAGTC 51753545 Query 117 CCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTAC 176 ||| |||| ||||||||| || |||| || | ||| | | |||||| |||| || | Sbjct 51753546 CCATTGTGGCTGATCATCTGAAAAGGCCAGCTAAGCATCATTGGCTTGGTCAGCCTTTGC 51753605 Query 177 CTCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218 || | |||||| ||||| | || ||||||||| | ||||| Sbjct 51753606 CTGATCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 51753647 >seq6 Length=53892272 Score = 100 bits (110), Expect = 6e-19 Identities = 141/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTT-TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 || |||| || || |||| || || | ||| ||||||| || ||||||||| ||| Sbjct 50165273 TTCACAACCCATAGGCCTTTTTATCTC-CACATGGCATTG-CTCTGTCAGGCTTTT-CCC 50165217 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 ||||| || |||||| || | |||||| | ||||||| ||| | |||||| | ||| Sbjct 50165216 ATTGTGAAAAATTCCCTACCGTTGCCTCTCATAGGAGTTTGGGTCATGTCTCCATCCCAA 50165157 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 | || |||||||| || || ||| || ||| ||| |||||| || | || ||||| Sbjct 50165156 TATGGCTGATCATTCTTTCGGACTAGCTACTAATCATCGCCTCAGTACACTATAGCCTCA 50165097 Query 181 CCAACTAGCTAAT 193 | ||||||||||| Sbjct 50165096 CTAACTAGCTAAT 50165084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071946925280