Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq4951 266 1e-68 seq9 253 7e-65 seq3 129 2e-27 seq11 127 7e-27 seq10 123 9e-26 seq5 98.7 4e-18 seq7 95.1 4e-17 seq6 89.7 2e-15 seq4 82.4 3e-13 seq2 80.6 1e-12 >seq4951 Length=160137 Score = 266 bits (294), Expect = 1e-68 Identities = 345/470 (73%), Gaps = 24/470 (5%) Strand=Plus/Minus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 110301 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 110242 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | | |||||| | ||| ||||||| ||||||| || Sbjct 110241 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 110182 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | |||| |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 110181 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 110122 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370 || | ||||||| |||||||||||||||||||| || || |||| Sbjct 110121 ACAAT----TGCCCTATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAA 110069 Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 || || ||| | | | |||| |||||||||||||| |||||||| |||| | Sbjct 110068 CCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA---GAG 110014 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 |||| || || |||| || | ||| || | ||||||| || ||||||||| Sbjct 110013 TCCTAGTAG-----TCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCAC 109959 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 |||||| ||||| ||||||||| ||||||||||||||| | |||||| ||||||| | Sbjct 109958 TCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATGGGTCACCCA 109899 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||||||||||| ||| |||||||| | |||||||||| ||| || Sbjct 109898 GGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 109849 Score = 266 bits (294), Expect = 1e-68 Identities = 345/470 (73%), Gaps = 24/470 (5%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 138709 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 138768 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | | |||||| | ||| ||||||| ||||||| || Sbjct 138769 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 138828 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | |||| |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 138829 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 138888 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370 || | ||||||| |||||||||||||||||||| || || |||| Sbjct 138889 ACAAT----TGCCCTATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAA 138941 Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 || || ||| | | | |||| |||||||||||||| |||||||| |||| | Sbjct 138942 CCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA---GAG 138996 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 |||| || || |||| || | ||| || | ||||||| || ||||||||| Sbjct 138997 TCCTAGTAG-----TCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCAC 139051 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 |||||| ||||| ||||||||| ||||||||||||||| | |||||| ||||||| | Sbjct 139052 TCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATGGGTCACCCA 139111 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||||||||||| ||| |||||||| | |||||||||| ||| || Sbjct 139112 GGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 139161 >seq9 Length=39018107 Score = 253 bits (280), Expect = 7e-65 Identities = 337/461 (73%), Gaps = 24/461 (5%) Strand=Plus/Minus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||| ||||||||||||||| | | ||| || |||| |||||| Sbjct 28484666 GCTGCGCCTCAACGCATTTTGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 28484607 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| | | | |||||| | ||| ||||||| ||||||| || Sbjct 28484606 CCCTAACCACAACTCATCCGTTGATTCTTCAACATCAGTTGGTTCGGACCTCCACTTAGT 28484547 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | |||| |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 28484546 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 28484487 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370 || | ||||||| |||||||||||||||||||| || || |||| Sbjct 28484486 ACAAT----TGCCCTATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAA 28484434 Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 || || ||| | | | |||| |||||||||||||| |||||||| |||| | Sbjct 28484433 CCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAATAGGCACGCGGTCA---GAG 28484379 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 |||| || || |||| || | ||| || | ||||||| || ||||||||| Sbjct 28484378 TCCTAGTAG-----TCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCAC 28484324 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 |||||| ||||| ||||||||| ||||||||||||||| | |||||| ||||||| | Sbjct 28484323 TCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATGGGTCACCCA 28484264 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACAC 590 ||||||||||| ||| |||||||| | ||||||||| Sbjct 28484263 GGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACAC 28484223 Score = 86.0 bits (94), Expect = 2e-14 Identities = 144/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 88 GGGCC-CCCTAGACCATCCAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTA 146 ||||| |||| | |||| ||||||||||||| || | ||| | | ||| || | Sbjct 15383711 GGGCCACCCTTGCCCATTGAGTGCTCTACCTCGGGCCATCGACATGATATGCTCTACTGA 15383770 Query 147 AATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCAC 206 ||| |||| | || ||| |||||| | || || | |||||||||| |||||| |||| Sbjct 15383771 AATAGATTTTGCAGAAAACTAGCTATATCCAATTTCGGTTGGCCTTTCGCCCCTAGCCAC 15383830 Query 207 AGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTA-CCCGC 265 | | ||||| | ||| | || || ||||||| |||||||| | | ||| | | Sbjct 15383831 AAATTATCCCTATATTTTGCCACATACCTGGGTTCAGTCCTCCAAGGCCTGTTAGACACC 15383890 Query 266 GCTTCAACCTGCCCATGGATAGATCA 291 ||||||| ||| | || ||||||| Sbjct 15383891 TCTTCAACTTGCTTAGGGCTAGATCA 15383916 >seq3 Length=80079441 Score = 129 bits (142), Expect = 2e-27 Identities = 271/404 (67%), Gaps = 50/404 (12%) Strand=Plus/Minus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 || || ||| |||||||||| |||||||||||||| | | ||| || |||| |||||| Sbjct 56888001 GCCGCGCCTCAATGCATTTCAGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 56887942 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||| | || | | |||||| | ||| ||||||| ||||||| || Sbjct 56887941 CCCTAACCACAACTCATTCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 56887882 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | ||| |||||| | | | | ||||||| | | | | ||| Sbjct 56887881 TTCACCAAAGCTTCATC------------------CCTAGGTTCGGGTCCATAAGCAGTG 56887840 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTAC--------CCCACACGGG 366 || | ||||||| |||||||||||||||||||| | ||| Sbjct 56887839 ACAAT----TGCCCTATGAAGACTCGCTTTCGCTACGGCTTCGGTGGTTTCCC------- 56887791 Query 367 TTAACCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACC 425 |||||| || ||| || | | |||| |||||||||||||| |||||||| |||| Sbjct 56887790 TTAACCAAGC--CACTACTTATGAGTCGCCGGCTCATTCTTCAATAGGCACGCGGTCA-- 56887735 Query 426 TGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATT 485 | |||| || || |||| | | ||| || | ||||||| || ||||| Sbjct 56887734 -GAGTCCTAGTAG-----TCTCCTCCCATTGCTTGGGAGCTTACGGTTTCATGTTCTATT 56887681 Query 486 TCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACT 529 ||||| ||| ||||| ||||||||| |||||||| |||||| Sbjct 56887680 TCACTACCCAATGGGGGTTCTTTTCACCCTTCCCTCATGGTACT 56887637 >seq11 Length=45509462 Score = 127 bits (140), Expect = 7e-27 Identities = 106/130 (82%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 470 GGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACT 529 ||||||| || ||||||||||||||| ||||| ||||||||| ||||||||||||||| Sbjct 19771817 GGTTTCATGTTCTATTTCACTCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACT 19771758 Query 530 TGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACA 589 | |||||| ||||||| |||||||||||| ||| |||||||| | |||||||| Sbjct 19771757 ACTTCGCTATGGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACA 19771698 Query 590 CGAAATTTCA 599 || ||| || Sbjct 19771697 CGGGATTCCA 19771688 >seq10 Length=39358841 Score = 123 bits (136), Expect = 9e-26 Identities = 148/199 (74%), Gaps = 8/199 (4%) Strand=Plus/Minus Query 391 TCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTC 450 |||| |||||||||||||| |||||||| |||| || |||| || | | ||| Sbjct 15814268 TCGCTGGCTCATTCTTCAATAGGCACGCGGTCAGA--GT-CCTAGTAGTCTC-----CTC 15814217 Query 451 CGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTC 510 | || | ||| || | ||||||| || |||||||||||||| | ||| |||||| Sbjct 15814216 CCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCAATGGAGGTTCTTTTC 15814157 Query 511 ACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGG 570 ||| ||||||||||||||| | | ||| ||||||| |||||||||||| ||| || Sbjct 15814156 ACCCTTCCCTCACGGTACTACTTCATTATGGGTCACCCAGGAGTATTTAGCCTTGCAAGG 15814097 Query 571 TGGTCCCGCCAGATTCACA 589 |||||| | |||||||| Sbjct 15814096 TGGTCCTTGCTGATTCACA 15814078 Score = 113 bits (124), Expect = 2e-22 Identities = 155/215 (72%), Gaps = 5/215 (2%) Strand=Plus/Minus Query 141 CACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCT 200 || || || |||||| ||||||| |||||| | | | |||||| |||| |||||||| | Sbjct 15815505 CATCTCAACGCATTTTAGGGAGAATCAGCTAGCTCTAGGTTTGAGTGGCATTTCACCCGT 15815446 Query 201 ATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTA 260 | ||||| |||||| || | | |||||| | | | |||| || ||| ||| || | | Sbjct 15815445 AACCACAACTCATCCGCTAATTCTTCAACATCAATCGGTTTGGACCTACACTTAGTTTCA 15815386 Query 261 CCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATC-GTGCCACT 319 ||| |||||| |||| |||||||||||||| | || ||| | | | | ||| || | Sbjct 15815385 CCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTTGGGCCATAAGCAGTGACAAT 15815326 Query 320 CATACGCCCTATTCGGACTCGCTTTCGCTACGGCT 354 ||| ||| ||||||||||| |||| ||| Sbjct 15815325 ----TGCCTTATGAAGACTCGCTTTCACTACAGCT 15815295 >seq5 Length=74729908 Score = 98.7 bits (108), Expect = 4e-18 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 179 GTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGG 238 ||| || |||| ||||||||||| ||||| |||||| || | | |||||| | ||| || Sbjct 58273609 GTTCGAGTGGCATTTCACCCCTAACCACAACTCATCCGCTAATTCTTCAACATCAGTCGG 58273550 Query 239 TTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCT 298 ||||| ||||||| || | |||| |||||| |||| |||||||||||||| | Sbjct 58273549 TTCGGACCTCCACTTAGTTTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAAGT 58273490 Query 299 TCGGGTC 305 ||||||| Sbjct 58273489 TCGGGTC 58273483 Score = 80.6 bits (88), Expect = 1e-12 Identities = 76/97 (78%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 481 CTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATC 540 ||||| ||||||| |||| ||||||||||||||||||| |||||||| || |||| Sbjct 51072718 CTATTGCACTCCCTAAATAGGGTTCTTTTCACCTTTCCCTCACAGTACTTGTACGTTATC 51072777 Query 541 GGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCC 577 |||| ||| || ||||||||| ||||||| || Sbjct 51072778 GGTCGTTGAGGGATACTTAGGCTTAGAGGGTGGTTCC 51072814 >seq7 Length=52445601 Score = 95.1 bits (104), Expect = 4e-17 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||||||| || ||||||||||||||| || || | | |||||| |||| |||||| Sbjct 18025086 GCTGCACCTCAACACATTTCGGGGAGAACTAGTTAACTCTGGGTTTGAGTGGCATTTCAC 18025145 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCAC 251 || || ||||| |||||| || | |||||||| | || |||||| ||||||| Sbjct 18025146 CCTTAACCACAACTCATCCGCTGATTTTTCAACATTAGCCAGTTCGGACCTCCAC 18025200 >seq6 Length=53892272 Score = 89.7 bits (98), Expect = 2e-15 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 484 TTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGT 543 |||||||||| ||||| | |||||| ||||||||||||||| | |||||| ||| Sbjct 32972726 TTTCACTCCCTAATGGGGGTTTTGTTCACCCTTCCCTCACGGTACTACTTCGCTATAGGT 32972667 Query 544 CACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCA 587 |||| |||||||||||| ||| |||||||| |||||||| Sbjct 32972666 CACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCAGATTCA 32972623 >seq4 Length=41978195 Score = 82.4 bits (90), Expect = 3e-13 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 482 TATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCG 541 ||||| |||||| | |||||| ||||| ||| || ||||||||||| | |||||| | Sbjct 10219089 TATTTTACTCCCTGATAGGGGTTCTTTTGACCATTTTCTCACGGTACTACTTCGCTATAG 10219030 Query 542 GTCACCAAGGAGTATTTA 559 |||||||||||||||||| Sbjct 10219029 GTCACCAAGGAGTATTTA 10219012 Score = 77.0 bits (84), Expect = 1e-11 Identities = 65/80 (81%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 485 TTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTC 544 ||||||||||| |||||| ||||| ||| || |||||| |||| | |||||| |||| Sbjct 10904696 TTCACTCCCCGATAGGGGTTCTTTTGACCATTTTCTCACGATACTACTTCGCTATAGGTC 10904755 Query 545 ACCAAGGAGTATTTAGGCTT 564 || ||| ||||||||| ||| Sbjct 10904756 ACTAAGAAGTATTTAGCCTT 10904775 >seq2 Length=64235786 Score = 80.6 bits (88), Expect = 1e-12 Identities = 67/82 (82%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 59313156 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 59313215 Query 197 CCCTATCCACAGGTCATCCCCT 218 ||||| ||||| |||||| || Sbjct 59313216 CCCTAACCACAACTCATCCGCT 59313237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817510010624