Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02]
4,951 sequences; 691,429,809 total letters
Query= AAMG01001291.1
Length=420
Score E
Sequences producing significant alignments: (Bits) Value
seq4951 219 1e-54
seq9 214 4e-53
seq11 143 7e-32
seq10 140 8e-31
seq3 102 2e-19
seq4 89.7 1e-15
seq6 87.8 4e-15
seq4043 86.0 2e-14
>seq4951
Length=160137
Score = 219 bits (242), Expect = 1e-54
Identities = 308/416 (74%), Gaps = 15/416 (4%)
Strand=Plus/Minus
Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68
||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| |
Sbjct 110235 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 110179
Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128
|||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | ||
Sbjct 110178 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 110123
Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186
||| | |||||| |||||||||||| ||||||| |||| | ||| |||| |
Sbjct 110122 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 110065
Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA--A 244
||||||| || |||||| | | |||| | ||| ||| |||| |||| | | |
Sbjct 110064 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGTCCTAGTA 110006
Query 245 GTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGG 304
|| ||||||||||||| || |||||||||| | ||||||||||||||| | |||
Sbjct 110005 GTCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGG 109947
Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364
||||||||| || |||||||||||||||| ||| |||| ||||| ||| ||||||||||
Sbjct 109946 GTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATGGGTCACCCAGGAGTATTTAGC 109887
Query 365 CTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420
|||| | | |||||| | ||||| || || | ||||| || | |||||||
Sbjct 109886 CTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 109831
Score = 219 bits (242), Expect = 1e-54
Identities = 308/416 (74%), Gaps = 15/416 (4%)
Strand=Plus/Plus
Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68
||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| |
Sbjct 138775 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 138831
Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128
|||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | ||
Sbjct 138832 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 138887
Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186
||| | |||||| |||||||||||| ||||||| |||| | ||| |||| |
Sbjct 138888 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 138945
Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA--A 244
||||||| || |||||| | | |||| | ||| ||| |||| |||| | | |
Sbjct 138946 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGTCCTAGTA 139004
Query 245 GTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGG 304
|| ||||||||||||| || |||||||||| | ||||||||||||||| | |||
Sbjct 139005 GTCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGG 139063
Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364
||||||||| || |||||||||||||||| ||| |||| ||||| ||| ||||||||||
Sbjct 139064 GTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATGGGTCACCCAGGAGTATTTAGC 139123
Query 365 CTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420
|||| | | |||||| | ||||| || || | ||||| || | |||||||
Sbjct 139124 CTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 139179
>seq9
Length=39018107
Score = 214 bits (236), Expect = 4e-53
Identities = 307/416 (74%), Gaps = 15/416 (4%)
Strand=Plus/Minus
Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68
||||| |||| ||| | | || |||||| ||| ||||||| |||||| ||||| |
Sbjct 28484600 CCACAACTCAT-CCGTTGA-TTCTTCAACATCAGTTGGTTCGGACCTCCACTTAGTT-TC 28484544
Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128
|||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | ||
Sbjct 28484543 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 28484488
Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186
||| | |||||| |||||||||||| ||||||| |||| | ||| |||| |
Sbjct 28484487 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 28484430
Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA--A 244
||||||| || |||||| | | |||| | ||| ||| |||| |||| | | |
Sbjct 28484429 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAATAGGCACGCGGTCAGAGTCCTAGTA 28484371
Query 245 GTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGG 304
|| ||||||||||||| || |||||||||| | ||||||||||||||| | |||
Sbjct 28484370 GTCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGG 28484312
Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364
||||||||| || |||||||||||||||| ||| |||| ||||| ||| ||||||||||
Sbjct 28484311 GTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATGGGTCACCCAGGAGTATTTAGC 28484252
Query 365 CTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420
|||| | | |||||| | ||||| ||| || | ||||| || | |||||||
Sbjct 28484251 CTTGCAAGGTGGTCCTTGCTGATTCACACAGGATTCCACGTGCCCCATGCTACTCG 28484196
>seq11
Length=45509462
Score = 143 bits (158), Expect = 7e-32
Identities = 135/171 (79%), Gaps = 1/171 (1%)
Strand=Plus/Minus
Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309
||||||||||||| || |||||||||| | ||||||||||||||| | ||||||||
Sbjct 19771839 CTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGGTTCT 19771781
Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369
|||| || |||||||||||||||| ||| |||| ||||| ||| ||||||||||||||
Sbjct 19771780 TTTCACCCTTCCCTCACGGTACTACTTCGCTATGGGTCACCCAGGAGTATTTAGCCTTGC 19771721
Query 370 AGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420
| | |||||| | ||||| || || | ||||| || | |||||||
Sbjct 19771720 AAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 19771670
>seq10
Length=39358841
Score = 140 bits (154), Expect = 8e-31
Identities = 141/181 (78%), Gaps = 3/181 (2%)
Strand=Plus/Minus
Query 201 AGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA--AGTGGGCTCCCACTG 258
|||||||| | |||| | ||| ||| |||| |||| | | ||| |||||||||
Sbjct 15814270 AGTCGCTGGCTCATTCTTCAATAGGCACGCGGTCAGAGTCCTAGTAGTCTCCTCCCACTG 15814211
Query 259 CTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTT 318
|||| || |||||||||| | ||||||||||||||| | | |||||||||| || |
Sbjct 15814210 CTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCAATG-GAGGTTCTTTTCACCCT 15814152
Query 319 TCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTC 378
||||||||||||||| |||| ||| ||||| ||| |||||||||||||| | | |||||
Sbjct 15814151 TCCCTCACGGTACTACTTCATTATGGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGGTC 15814092
Query 379 C 379
|
Sbjct 15814091 C 15814091
>seq3
Length=80079441
Score = 102 bits (112), Expect = 2e-19
Identities = 161/224 (72%), Gaps = 10/224 (4%)
Strand=Plus/Minus
Query 137 GCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTTTGCCACTG 194
|||||| |||||||||||| ||||||| || | | ||| |||| | ||||||
Sbjct 56887833 GCCCTATGAAGACTCGCTTT-CGCTACGGCTTCGGTGGTTTCCCTTAACCAA-GCCACTA 56887776
Query 195 AAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA--AGTGGGCTC 252
|| |||||| | | |||| | ||| ||| |||| |||| | | ||| |||
Sbjct 56887775 CTTATGAGTCGCCGGCTCATTCTTCAATAGGCACGCGGTCAGAGTCCTAGTAGTCTCCTC 56887716
Query 253 CCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTT 312
||| |||||| || |||||||||| | ||||||||||| ||| | |||||||||||
Sbjct 56887715 CCATTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTACCCAAT-GGGGGTTCTTTT 56887657
Query 313 CGCCTTTCCCTCACGG---TACTAGTTCACTATCGGTCAGTCAG 353
| || |||||||| || ||||| ||| ||| ||||| ||||
Sbjct 56887656 CACCCTTCCCTCATGGTACTACTACTTCGTTATGGGTCACTCAG 56887613
>seq4
Length=41978195
Score = 89.7 bits (98), Expect = 1e-15
Identities = 98/128 (77%), Gaps = 2/128 (2%)
Strand=Plus/Plus
Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309
||||||||||||| || || |||||| | |||| |||||||| | ||||||||
Sbjct 10904660 CTCCCACTGCTTGGGAGCGTATAGTTTCATTCTTTATT-CACTCCCCGATA-GGGGTTCT 10904717
Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369
||| || || |||||| ||||| ||| |||| ||||| | || ||||||||||||||
Sbjct 10904718 TTTGACCATTTTCTCACGATACTACTTCGCTATAGGTCACTAAGAAGTATTTAGCCTTGT 10904777
Query 370 AGGATGGT 377
| || |||
Sbjct 10904778 AAGACGGT 10904785
Score = 84.2 bits (92), Expect = 5e-14
Identities = 96/128 (75%), Gaps = 1/128 (1%)
Strand=Plus/Minus
Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309
||||||||||||| || || ||||| | ||||| |||||| | ||||||||
Sbjct 10219123 CTCCCACTGCTTGGGAGCGTATAGTTTCTTTTTTTATTTTACTCCCTGATA-GGGGTTCT 10219065
Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369
||| || || |||||||||||| ||| |||| ||||| || |||||||| |||||
Sbjct 10219064 TTTGACCATTTTCTCACGGTACTACTTCGCTATAGGTCACCAAGGAGTATTTACCCTTGC 10219005
Query 370 AGGATGGT 377
| ||||||
Sbjct 10219004 AAGATGGT 10218997
Score = 84.2 bits (92), Expect = 5e-14
Identities = 96/128 (75%), Gaps = 1/128 (1%)
Strand=Plus/Minus
Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309
||||||||||||| || || ||||| | ||||||||||||| | || ||||
Sbjct 10646301 CTCCCACTGCTTGGGAGCTTATAATTTCATTCTTTATTTCACTCCCCGATA-GGATTTCT 10646243
Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369
||| || || |||||||||||| |||| ||| ||||| | | |||||||| |||||
Sbjct 10646242 TTTGACCATTTTCTCACGGTACTACTTCATTATAGGTCACTAAAGAGTATTTATCCTTGC 10646183
Query 370 AGGATGGT 377
| ||||||
Sbjct 10646182 AAGATGGT 10646175
Score = 80.6 bits (88), Expect = 7e-13
Identities = 95/127 (75%), Gaps = 4/127 (3%)
Strand=Plus/Plus
Query 250 CTCCCACT-GCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTC 308
|||||| | ||||| || ||| ||||| ||| ||||||||||| | ||||||
Sbjct 10931289 CTCCCATTTGCTTGGGAGCTTACAATTTCATGATTTATTTCACTCCTTGAT---GGGTTC 10931345
Query 309 TTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTG 368
|||| || ||| |||| ||||| | || ||||| ||| |||| ||||||||||||||
Sbjct 10931346 TTTTGACCCTTCTCTCATGGTACGACTTTACTATATATCACTCAGGAGTATTTAGCCTTG 10931405
Query 369 GAGGATG 375
| ||||
Sbjct 10931406 CAAGATG 10931412
Score = 73.4 bits (80), Expect = 1e-10
Identities = 118/167 (71%), Gaps = 2/167 (1%)
Strand=Plus/Minus
Query 253 CCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTT 312
||| ||||| || |||||||||| ||||||||||| | | ||| || ||||
Sbjct 34289773 CCAATGCTTTGGAGCTTACGGTTTCATATTCTATTTCACT-CTTTGATAGGGATTATTTT 34289715
Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372
| | ||||||||| |||||| ||| |||| | ||| | || || || |||||||| | |
Sbjct 34289714 CATCATTCCCTCACAGTACTACTTCGCTATGGATCACTTAGGAGAATCTAGCCTTGCAAG 34289655
Query 373 ATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419
|| ||| | ||||| ||| |||| | |||| | | ||||||
Sbjct 34289654 GTGATCCTTACTAATTCACACAGGATTTCACATGCT-CATACTACTC 34289609
>seq6
Length=53892272
Score = 87.8 bits (96), Expect = 4e-15
Identities = 83/105 (79%), Gaps = 1/105 (1%)
Strand=Plus/Minus
Query 286 TTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGG 345
|||||||||| | |||||| | ||| || |||||||||||||||| ||| |||| ||
Sbjct 32972726 TTTCACTCCCTAATG-GGGGTTTTGTTCACCCTTCCCTCACGGTACTACTTCGCTATAGG 32972668
Query 346 TCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCA 390
||| ||| |||||||||||||| | | |||||| || |||||
Sbjct 32972667 TCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCAGATTCA 32972623
>seq4043
Length=3217
Score = 86.0 bits (94), Expect = 2e-14
Identities = 139/196 (71%), Gaps = 7/196 (4%)
Strand=Plus/Minus
Query 199 TAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTG 258
||||| ||||||||||||| ||||||||||| ||| ||| | | ||| |||
Sbjct 3164 TAAGTTGCTGACCCATTATGCAAAAGGTACGACATCAT--AACTTAATA--CTCTGTCTG 3109
Query 259 CTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTT 318
||| || | | | |||||| ||| |||||| | || || | ||||| |||
Sbjct 3108 CTTATAGGATTGCTAGTTCAGGCTCTGTTTCAC--CAGTCATCGACTTGCTTTTAATCTT 3051
Query 319 TCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTC 378
||| |||| ||||| |||||||||| | | | || ||||||||||||||||||
Sbjct 3050 TCCTTCACAGTACTC-TTCACTATCGCTAAACACATCATACTTAGCCTTGGAGGATGGTG 2992
Query 379 CCCCCATATTCAGACA 394
||||| ||||| ||||
Sbjct 2991 CCCCCGTATTCGGACA 2976
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1241538528384
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