Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq4951 219 1e-54 seq9 214 4e-53 seq11 143 7e-32 seq10 140 8e-31 seq3 102 2e-19 seq4 89.7 1e-15 seq6 87.8 4e-15 seq4043 86.0 2e-14 >seq4951 Length=160137 Score = 219 bits (242), Expect = 1e-54 Identities = 308/416 (74%), Gaps = 15/416 (4%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| | Sbjct 110235 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 110179 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 110178 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 110123 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | |||||| |||||||||||| ||||||| |||| | ||| |||| | Sbjct 110122 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 110065 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA--A 244 ||||||| || |||||| | | |||| | ||| ||| |||| |||| | | | Sbjct 110064 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGTCCTAGTA 110006 Query 245 GTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGG 304 || ||||||||||||| || |||||||||| | ||||||||||||||| | ||| Sbjct 110005 GTCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGG 109947 Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 ||||||||| || |||||||||||||||| ||| |||| ||||| ||| |||||||||| Sbjct 109946 GTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATGGGTCACCCAGGAGTATTTAGC 109887 Query 365 CTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||| | | |||||| | ||||| || || | ||||| || | ||||||| Sbjct 109886 CTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 109831 Score = 219 bits (242), Expect = 1e-54 Identities = 308/416 (74%), Gaps = 15/416 (4%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| | Sbjct 138775 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 138831 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 138832 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 138887 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | |||||| |||||||||||| ||||||| |||| | ||| |||| | Sbjct 138888 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 138945 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA--A 244 ||||||| || |||||| | | |||| | ||| ||| |||| |||| | | | Sbjct 138946 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGTCCTAGTA 139004 Query 245 GTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGG 304 || ||||||||||||| || |||||||||| | ||||||||||||||| | ||| Sbjct 139005 GTCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGG 139063 Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 ||||||||| || |||||||||||||||| ||| |||| ||||| ||| |||||||||| Sbjct 139064 GTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATGGGTCACCCAGGAGTATTTAGC 139123 Query 365 CTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||| | | |||||| | ||||| || || | ||||| || | ||||||| Sbjct 139124 CTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 139179 >seq9 Length=39018107 Score = 214 bits (236), Expect = 4e-53 Identities = 307/416 (74%), Gaps = 15/416 (4%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||| | | || |||||| ||| ||||||| |||||| ||||| | Sbjct 28484600 CCACAACTCAT-CCGTTGA-TTCTTCAACATCAGTTGGTTCGGACCTCCACTTAGTT-TC 28484544 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 28484543 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 28484488 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | |||||| |||||||||||| ||||||| |||| | ||| |||| | Sbjct 28484487 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 28484430 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA--A 244 ||||||| || |||||| | | |||| | ||| ||| |||| |||| | | | Sbjct 28484429 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAATAGGCACGCGGTCAGAGTCCTAGTA 28484371 Query 245 GTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGG 304 || ||||||||||||| || |||||||||| | ||||||||||||||| | ||| Sbjct 28484370 GTCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGG 28484312 Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 ||||||||| || |||||||||||||||| ||| |||| ||||| ||| |||||||||| Sbjct 28484311 GTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATGGGTCACCCAGGAGTATTTAGC 28484252 Query 365 CTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||| | | |||||| | ||||| ||| || | ||||| || | ||||||| Sbjct 28484251 CTTGCAAGGTGGTCCTTGCTGATTCACACAGGATTCCACGTGCCCCATGCTACTCG 28484196 >seq11 Length=45509462 Score = 143 bits (158), Expect = 7e-32 Identities = 135/171 (79%), Gaps = 1/171 (1%) Strand=Plus/Minus Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309 ||||||||||||| || |||||||||| | ||||||||||||||| | |||||||| Sbjct 19771839 CTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGGTTCT 19771781 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369 |||| || |||||||||||||||| ||| |||| ||||| ||| |||||||||||||| Sbjct 19771780 TTTCACCCTTCCCTCACGGTACTACTTCGCTATGGGTCACCCAGGAGTATTTAGCCTTGC 19771721 Query 370 AGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 | | |||||| | ||||| || || | ||||| || | ||||||| Sbjct 19771720 AAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 19771670 >seq10 Length=39358841 Score = 140 bits (154), Expect = 8e-31 Identities = 141/181 (78%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 201 AGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA--AGTGGGCTCCCACTG 258 |||||||| | |||| | ||| ||| |||| |||| | | ||| ||||||||| Sbjct 15814270 AGTCGCTGGCTCATTCTTCAATAGGCACGCGGTCAGAGTCCTAGTAGTCTCCTCCCACTG 15814211 Query 259 CTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTT 318 |||| || |||||||||| | ||||||||||||||| | | |||||||||| || | Sbjct 15814210 CTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCAATG-GAGGTTCTTTTCACCCT 15814152 Query 319 TCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTC 378 ||||||||||||||| |||| ||| ||||| ||| |||||||||||||| | | ||||| Sbjct 15814151 TCCCTCACGGTACTACTTCATTATGGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGGTC 15814092 Query 379 C 379 | Sbjct 15814091 C 15814091 >seq3 Length=80079441 Score = 102 bits (112), Expect = 2e-19 Identities = 161/224 (72%), Gaps = 10/224 (4%) Strand=Plus/Minus Query 137 GCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTTTGCCACTG 194 |||||| |||||||||||| ||||||| || | | ||| |||| | |||||| Sbjct 56887833 GCCCTATGAAGACTCGCTTT-CGCTACGGCTTCGGTGGTTTCCCTTAACCAA-GCCACTA 56887776 Query 195 AAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA--AGTGGGCTC 252 || |||||| | | |||| | ||| ||| |||| |||| | | ||| ||| Sbjct 56887775 CTTATGAGTCGCCGGCTCATTCTTCAATAGGCACGCGGTCAGAGTCCTAGTAGTCTCCTC 56887716 Query 253 CCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTT 312 ||| |||||| || |||||||||| | ||||||||||| ||| | ||||||||||| Sbjct 56887715 CCATTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTACCCAAT-GGGGGTTCTTTT 56887657 Query 313 CGCCTTTCCCTCACGG---TACTAGTTCACTATCGGTCAGTCAG 353 | || |||||||| || ||||| ||| ||| ||||| |||| Sbjct 56887656 CACCCTTCCCTCATGGTACTACTACTTCGTTATGGGTCACTCAG 56887613 >seq4 Length=41978195 Score = 89.7 bits (98), Expect = 1e-15 Identities = 98/128 (77%), Gaps = 2/128 (2%) Strand=Plus/Plus Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309 ||||||||||||| || || |||||| | |||| |||||||| | |||||||| Sbjct 10904660 CTCCCACTGCTTGGGAGCGTATAGTTTCATTCTTTATT-CACTCCCCGATA-GGGGTTCT 10904717 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369 ||| || || |||||| ||||| ||| |||| ||||| | || |||||||||||||| Sbjct 10904718 TTTGACCATTTTCTCACGATACTACTTCGCTATAGGTCACTAAGAAGTATTTAGCCTTGT 10904777 Query 370 AGGATGGT 377 | || ||| Sbjct 10904778 AAGACGGT 10904785 Score = 84.2 bits (92), Expect = 5e-14 Identities = 96/128 (75%), Gaps = 1/128 (1%) Strand=Plus/Minus Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309 ||||||||||||| || || ||||| | ||||| |||||| | |||||||| Sbjct 10219123 CTCCCACTGCTTGGGAGCGTATAGTTTCTTTTTTTATTTTACTCCCTGATA-GGGGTTCT 10219065 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369 ||| || || |||||||||||| ||| |||| ||||| || |||||||| ||||| Sbjct 10219064 TTTGACCATTTTCTCACGGTACTACTTCGCTATAGGTCACCAAGGAGTATTTACCCTTGC 10219005 Query 370 AGGATGGT 377 | |||||| Sbjct 10219004 AAGATGGT 10218997 Score = 84.2 bits (92), Expect = 5e-14 Identities = 96/128 (75%), Gaps = 1/128 (1%) Strand=Plus/Minus Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309 ||||||||||||| || || ||||| | ||||||||||||| | || |||| Sbjct 10646301 CTCCCACTGCTTGGGAGCTTATAATTTCATTCTTTATTTCACTCCCCGATA-GGATTTCT 10646243 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369 ||| || || |||||||||||| |||| ||| ||||| | | |||||||| ||||| Sbjct 10646242 TTTGACCATTTTCTCACGGTACTACTTCATTATAGGTCACTAAAGAGTATTTATCCTTGC 10646183 Query 370 AGGATGGT 377 | |||||| Sbjct 10646182 AAGATGGT 10646175 Score = 80.6 bits (88), Expect = 7e-13 Identities = 95/127 (75%), Gaps = 4/127 (3%) Strand=Plus/Plus Query 250 CTCCCACT-GCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTC 308 |||||| | ||||| || ||| ||||| ||| ||||||||||| | |||||| Sbjct 10931289 CTCCCATTTGCTTGGGAGCTTACAATTTCATGATTTATTTCACTCCTTGAT---GGGTTC 10931345 Query 309 TTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTG 368 |||| || ||| |||| ||||| | || ||||| ||| |||| |||||||||||||| Sbjct 10931346 TTTTGACCCTTCTCTCATGGTACGACTTTACTATATATCACTCAGGAGTATTTAGCCTTG 10931405 Query 369 GAGGATG 375 | |||| Sbjct 10931406 CAAGATG 10931412 Score = 73.4 bits (80), Expect = 1e-10 Identities = 118/167 (71%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 253 CCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTT 312 ||| ||||| || |||||||||| ||||||||||| | | ||| || |||| Sbjct 34289773 CCAATGCTTTGGAGCTTACGGTTTCATATTCTATTTCACT-CTTTGATAGGGATTATTTT 34289715 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372 | | ||||||||| |||||| ||| |||| | ||| | || || || |||||||| | | Sbjct 34289714 CATCATTCCCTCACAGTACTACTTCGCTATGGATCACTTAGGAGAATCTAGCCTTGCAAG 34289655 Query 373 ATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 || ||| | ||||| ||| |||| | |||| | | |||||| Sbjct 34289654 GTGATCCTTACTAATTCACACAGGATTTCACATGCT-CATACTACTC 34289609 >seq6 Length=53892272 Score = 87.8 bits (96), Expect = 4e-15 Identities = 83/105 (79%), Gaps = 1/105 (1%) Strand=Plus/Minus Query 286 TTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGG 345 |||||||||| | |||||| | ||| || |||||||||||||||| ||| |||| || Sbjct 32972726 TTTCACTCCCTAATG-GGGGTTTTGTTCACCCTTCCCTCACGGTACTACTTCGCTATAGG 32972668 Query 346 TCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCA 390 ||| ||| |||||||||||||| | | |||||| || ||||| Sbjct 32972667 TCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCAGATTCA 32972623 >seq4043 Length=3217 Score = 86.0 bits (94), Expect = 2e-14 Identities = 139/196 (71%), Gaps = 7/196 (4%) Strand=Plus/Minus Query 199 TAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTG 258 ||||| ||||||||||||| ||||||||||| ||| ||| | | ||| ||| Sbjct 3164 TAAGTTGCTGACCCATTATGCAAAAGGTACGACATCAT--AACTTAATA--CTCTGTCTG 3109 Query 259 CTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTT 318 ||| || | | | |||||| ||| |||||| | || || | ||||| ||| Sbjct 3108 CTTATAGGATTGCTAGTTCAGGCTCTGTTTCAC--CAGTCATCGACTTGCTTTTAATCTT 3051 Query 319 TCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTC 378 ||| |||| ||||| |||||||||| | | | || |||||||||||||||||| Sbjct 3050 TCCTTCACAGTACTC-TTCACTATCGCTAAACACATCATACTTAGCCTTGGAGGATGGTG 2992 Query 379 CCCCCATATTCAGACA 394 ||||| ||||| |||| Sbjct 2991 CCCCCGTATTCGGACA 2976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241538528384