Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq4951 219 8e-55 seq9 196 1e-47 seq2 178 3e-42 seq320 158 2e-36 seq11 156 8e-36 seq5 154 3e-35 seq23 147 4e-33 seq3 138 2e-30 seq549 125 1e-26 seq7 96.9 7e-18 seq10 73.4 8e-11 >seq4951 Length=160137 Score = 219 bits (242), Expect = 8e-55 Identities = 233/305 (76%), Gaps = 18/305 (6%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||| Sbjct 105916 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 105857 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| ||| Sbjct 105856 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 105797 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| |||||| ||||||||||| |||||| | ||||||||| || | Sbjct 105796 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGG 105737 Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 || ||| || || ||| ||||| | | || | ||||||||| Sbjct 105736 GCGGATTCCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAGC 105693 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||||||| ||| |||| ||| || |||||||| || ||| |||||||||||||||| Sbjct 105692 CGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCG 105634 Query 300 CCACT 304 ||||| Sbjct 105633 CCACT 105629 Score = 219 bits (242), Expect = 8e-55 Identities = 233/305 (76%), Gaps = 18/305 (6%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||| Sbjct 143094 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 143153 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| ||| Sbjct 143154 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 143213 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| |||||| ||||||||||| |||||| | ||||||||| || | Sbjct 143214 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGG 143273 Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 || ||| || || ||| ||||| | | || | ||||||||| Sbjct 143274 GCGGATTCCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAGC 143317 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||||||| ||| |||| ||| || |||||||| || ||| |||||||||||||||| Sbjct 143318 CGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCG 143376 Query 300 CCACT 304 ||||| Sbjct 143377 CCACT 143381 >seq9 Length=39018107 Score = 196 bits (216), Expect = 1e-47 Identities = 222/293 (76%), Gaps = 20/293 (7%) Strand=Plus/Minus Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72 ||||| |||| || |||| | || || ||||||||| ||||||||||||||||||||||| Sbjct 28456770 TCAGGCTTTCGCC-ATTGCGGAAAATTCCCCACTGC-GCCTCCCGTAGGAGTCTGGGCCG 28456713 Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132 ||| ||||||||| |||||| | ||| |||||| | || ||||| |||| ||| |||||| Sbjct 28456712 TGTATCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGT 28456653 Query 133 GGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGC-GATAAATCT 191 |||||| ||||||||||| |||||| | ||||||||| || | || ||| || Sbjct 28456652 AAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGGGCGGATTCCTCC 28456593 Query 192 TTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTCCAAACG 251 || ||| ||||| | | || | ||||||||| |||||||| | Sbjct 28456592 TT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAGCCGTTTCCAGCTG 28456549 Query 252 TTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACT 304 || |||| ||| || |||||||| || ||| ||||||||||||||||||||| Sbjct 28456548 TTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCGCCACT 28456497 >seq2 Length=64235786 Score = 178 bits (196), Expect = 3e-42 Identities = 217/294 (74%), Gaps = 18/294 (6%) Strand=Plus/Minus Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72 ||||| |||| ||||||| | || || ||||||| || |||||||||||||||| ||||| Sbjct 46887956 TCAGGCTTTCACCCATTGCGGAAAATTCCCCACTACTACCTCCCGTAGGAGTCTAGGCCG 46887897 Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132 || || | ||||| |||||| | ||| ||||| | || | ||| |||| ||| |||||| Sbjct 46887896 TGCCTTAATCCCAGTGTGGCTGATCATCCTCTTGGACCAGTTACTGATCATCGCCTTGGT 46887837 Query 133 GGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGC-GATAAATCT 191 |||||| ||||||||||| |||||| | ||||||||| || || || ||| ||| Sbjct 46887836 AAGCTATTGCCTCACCAACTAACTAATCAGTCGCGAGCCCCTCCTTGGGCGGATTCCTCT 46887777 Query 192 TTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTCCAAACG 251 || ||| ||||| | || | ||||||||| | ||||||| | Sbjct 46887776 TT------------TTGC--TCCTC--AACCTACGGGGTATTAGCAGCCATTTCCAACTG 46887733 Query 252 TTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACTA 305 || |||| ||| || |||||||| || | | ||||||||||||||||| |||| Sbjct 46887732 TTGTTCCCCTCCCAAGGGCAGGTT-CTTATGCGTTACTCACCCGTCCGCTACTA 46887680 >seq320 Length=36444 Score = 158 bits (174), Expect = 2e-36 Identities = 137/170 (81%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||| ||||||| ||||| Sbjct 25481 GGCATTGCTCCGTCAGGCTTTCACCCATTGCGGAAAATTCCCCACTACTGCCTCTCGTAG 25422 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||| | |||||| | ||| |||||||| || ||||| || Sbjct 25421 GAGTCTGGGCCGTGTCTCAGTCCTAGTGTGGCTGATCATCCTCTCAGACCAGCTACTAAT 25362 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGC 170 | ||| |||||| | ||| ||||||||||| |||||| | |||||| Sbjct 25361 CATCGCCTTGGTAAGTTATCGCCTCACCAACTAGCTAATCAGATGCGAGC 25312 >seq11 Length=45509462 Score = 156 bits (172), Expect = 8e-36 Identities = 184/247 (74%), Gaps = 18/247 (7%) Strand=Plus/Plus Query 47 GCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCA 106 ||||||||||||||||||||||||||||||||||||||| |||||| | ||| |||||| Sbjct 19770425 GCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCG 19770484 Query 107 GTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGC 166 | || ||||| |||| ||| |||||| |||||| ||||||||||| |||||| | ||| Sbjct 19770485 GACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGC 19770544 Query 167 GAGCCCATCTTTCAGC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTAT 225 ||||| || | || ||| || || ||| ||||| | | || Sbjct 19770545 AAGCCCCTCCTCGGGCGGATTCCTCCTT------------TTGC--TCCTCAGCC--TAC 19770588 Query 226 GCGGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGT 285 | ||||||||| |||||||| ||| |||| ||| || |||||||| || ||| || Sbjct 19770589 GGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGT 19770647 Query 286 TACTCAC 292 ||||||| Sbjct 19770648 TACTCAC 19770654 >seq5 Length=74729908 Score = 154 bits (170), Expect = 3e-35 Identities = 139/175 (79%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| ||||||| |||| ||||||| | || || ||||||||||||||| ||||| Sbjct 8711763 GGCATTGCTCCATCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCTCGTAG 8711822 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||| |||||| ||| ||||||| | |||||| | ||| |||||||| || ||||| || Sbjct 8711823 GAGTTTGGGCCATGTATCAGTCCTAGTGTGGCTGATCATCCTCTCAGACCAGCTACTAAT 8711882 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATC 175 | ||| |||||| | ||| ||||||||||| ||||| | |||||||| || Sbjct 8711883 CATCGCCTTGGTAAGTTATCGCCTCACCAACTAGCTAATTAGATGCGAGCCCCTC 8711937 Score = 78.8 bits (86), Expect = 2e-12 Identities = 55/63 (87%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 11 CATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGC 70 ||||||| |||| | ||||||| || || |||||||| |||||||||||||||| ||||| Sbjct 11597035 CATCAGGCTTTCACTCATTGTGGAAAATTCCCCACTGTTGCCTCCCGTAGGAGTATGGGC 11596976 Query 71 CGT 73 ||| Sbjct 11596975 CGT 11596973 Score = 73.4 bits (80), Expect = 8e-11 Identities = 63/77 (82%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 228 GGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTA 287 ||||||||| |||||||| ||| |||| ||| || |||||||| || ||| |||| Sbjct 58270541 GGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTA 58270599 Query 288 CTCACCCGTCCGCCACT 304 ||||||||||||||||| Sbjct 58270600 CTCACCCGTCCGCCACT 58270616 >seq23 Length=625428 Score = 147 bits (162), Expect = 4e-33 Identities = 202/281 (72%), Gaps = 16/281 (6%) Strand=Plus/Minus Query 24 CCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCC 83 ||||||| | || || ||||| | ||||||||||||||||||||||| ||||||||| || Sbjct 541610 CCCATTGCGGAAAATTCCCCATTACTGCCTCCCGTAGGAGTCTGGGCTGTGTCTCAGCCC 541551 Query 84 CAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATC 143 || |||| || ||| ||| |||| | ||||| ||| | |||||| | ||| || | Sbjct 541550 CAGTGTGACCAATCATCCTTTCAGACTAGCTACTGATTATTGGCTTGTTAAGCTGTTGCC 541491 Query 144 TCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCGATAAATCTTTGGTCAAAGAA 203 |||||||||| ||||| | |||| ||| || || | || | || | | | Sbjct 541490 TCACCAACTAATTAATCAGATGCGAACCCCTCCTT--GGGAGGATTCCTCCTTTTA---- 541437 Query 204 TGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCT 263 ||||| | | |||| |||||||| |||||||||| |||||||| ||| Sbjct 541436 -------CTCCTCAGCC--TATGGAGTATTAGCAGTCGTTTCCAACTGTTATTCCTCTCC 541386 Query 264 GAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACT 304 || |||| ||| || | | ||||||||| ||||||||||| Sbjct 541385 CAAGGGCAAGTT-CTTATGCGTTACTCACTCGTCCGCCACT 541346 >seq3 Length=80079441 Score = 138 bits (152), Expect = 2e-30 Identities = 117/144 (81%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 28 TTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAAT 87 ||| | || || |||||||||| |||||| |||||||||||||||||||||||||||||| Sbjct 55014275 TTGCGGAAAATTCCCCACTGCTACCTCCCATAGGAGTCTGGGCCGTGTCTCAGTCCCAAT 55014216 Query 88 GTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCAC 147 ||||| | ||| |||||| | | |||| |||| || |||||| ||||| ||||| Sbjct 55014215 GTGGCTGATCATCCTCTCGGACTAGCTATTGATCATCACCTTGGTAAGCTATGGCCTCAC 55014156 Query 148 CAACTACCTAATCGGCCGCGAGCC 171 |||||| ||||| | |||||||| Sbjct 55014155 CAACTAGCTAATTAGACGCGAGCC 55014132 Score = 109 bits (120), Expect = 1e-21 Identities = 83/98 (85%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || |||||||||||||||||||| Sbjct 16238546 GGCATTGCTCCGTCAGGCTTTCACCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAT 16238605 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCA 98 ||||||||||||||||||| ||||| |||||| | ||| Sbjct 16238606 GAGTCTGGGCCGTGTCTCACTCCCAGTGTGGCTGATCA 16238643 Score = 91.5 bits (100), Expect = 3e-16 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 15 AGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTG 74 ||| |||||||||||| || || ||| | |||| |||||| || ||||||| |||||| Sbjct 31054031 AGGCTTTCCCCCATTGCAGAAAATTCCCTATTGCTACCTCCCATAAGAGTCTGAGCCGTG 31053972 Query 75 TCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132 ||| |||| ||||||||| ||| || ||||| || ||| |||| | | |||||| Sbjct 31053971 TCTTAGTCTCAATGTGGCTAATCATCCACTCAGACCAATTACTGATCATTGCCTTGGT 31053914 >seq549 Length=23015 Score = 125 bits (138), Expect = 1e-26 Identities = 114/144 (79%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 28 TTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAAT 87 ||| | || || |||||||||| ||||| |||||||||||||| ||||||||||||| | Sbjct 13733 TTGCGGAAAATTCCCCACTGCTACCTCCTATAGGAGTCTGGGCCATGTCTCAGTCCCAGT 13792 Query 88 GTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCAC 147 ||||| | ||| |||||| | | |||| ||||| ||| |||||| | ||| ||||| Sbjct 13793 GTGGCTGATCATCCTCTCGGACTAGCTATCGATCATCGCCTTGGTAAGTTATGGCCTCAC 13852 Query 148 CAACTACCTAATCGGCCGCGAGCC 171 |||||| ||||| | ||| |||| Sbjct 13853 CAACTAGCTAATTAGACGCAAGCC 13876 >seq7 Length=52445601 Score = 96.9 bits (106), Expect = 7e-18 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 24 CCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCC 83 |||||||| ||| || ||||||||||||| ||||| ||||| ||| |||||||||||| Sbjct 51753487 CCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGAGAGTCCAGGCTGTGTCTCAGTCC 51753546 Query 84 CAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATC 143 || |||||| | ||| | || || |||| ||| | |||||||| || || | Sbjct 51753547 CATTGTGGCTGATCATCTGAAAAGGCCAGCTAAGCATCATTGGCTTGGTCAGCCTTTGCC 51753606 Query 144 TCACCAACTACCTAAT 159 | | |||||||||||| Sbjct 51753607 TGATCAACTACCTAAT 51753622 >seq10 Length=39358841 Score = 73.4 bits (80), Expect = 8e-11 Identities = 63/77 (82%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 228 GGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTA 287 ||||||||| |||||||| ||| |||| ||| || |||||||| || ||| |||| Sbjct 34345198 GGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTA 34345256 Query 288 CTCACCCGTCCGCCACT 304 ||||||||||||||||| Sbjct 34345257 CTCACCCGTCCGCCACT 34345273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998350569216