Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02]
4,951 sequences; 691,429,809 total letters
Query= AAMG01001432.1
Length=344
Score E
Sequences producing significant alignments: (Bits) Value
seq4951 219 8e-55
seq9 196 1e-47
seq2 178 3e-42
seq320 158 2e-36
seq11 156 8e-36
seq5 154 3e-35
seq23 147 4e-33
seq3 138 2e-30
seq549 125 1e-26
seq7 96.9 7e-18
seq10 73.4 8e-11
>seq4951
Length=160137
Score = 219 bits (242), Expect = 8e-55
Identities = 233/305 (76%), Gaps = 18/305 (6%)
Strand=Plus/Minus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | ||| | ||||| |||| ||||||| | || || |||||||||||||||||||||
Sbjct 105916 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 105857
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| |||
Sbjct 105856 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 105797
Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180
| ||| |||||| |||||| ||||||||||| |||||| | ||||||||| || |
Sbjct 105796 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGG 105737
Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239
|| ||| || || ||| ||||| | | || | |||||||||
Sbjct 105736 GCGGATTCCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAGC 105693
Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299
|||||||| ||| |||| ||| || |||||||| || ||| ||||||||||||||||
Sbjct 105692 CGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCG 105634
Query 300 CCACT 304
|||||
Sbjct 105633 CCACT 105629
Score = 219 bits (242), Expect = 8e-55
Identities = 233/305 (76%), Gaps = 18/305 (6%)
Strand=Plus/Plus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | ||| | ||||| |||| ||||||| | || || |||||||||||||||||||||
Sbjct 143094 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 143153
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| |||
Sbjct 143154 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 143213
Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180
| ||| |||||| |||||| ||||||||||| |||||| | ||||||||| || |
Sbjct 143214 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGG 143273
Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239
|| ||| || || ||| ||||| | | || | |||||||||
Sbjct 143274 GCGGATTCCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAGC 143317
Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299
|||||||| ||| |||| ||| || |||||||| || ||| ||||||||||||||||
Sbjct 143318 CGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCG 143376
Query 300 CCACT 304
|||||
Sbjct 143377 CCACT 143381
>seq9
Length=39018107
Score = 196 bits (216), Expect = 1e-47
Identities = 222/293 (76%), Gaps = 20/293 (7%)
Strand=Plus/Minus
Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72
||||| |||| || |||| | || || ||||||||| |||||||||||||||||||||||
Sbjct 28456770 TCAGGCTTTCGCC-ATTGCGGAAAATTCCCCACTGC-GCCTCCCGTAGGAGTCTGGGCCG 28456713
Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132
||| ||||||||| |||||| | ||| |||||| | || ||||| |||| ||| ||||||
Sbjct 28456712 TGTATCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGT 28456653
Query 133 GGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGC-GATAAATCT 191
|||||| ||||||||||| |||||| | ||||||||| || | || ||| ||
Sbjct 28456652 AAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGGGCGGATTCCTCC 28456593
Query 192 TTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTCCAAACG 251
|| ||| ||||| | | || | ||||||||| |||||||| |
Sbjct 28456592 TT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAGCCGTTTCCAGCTG 28456549
Query 252 TTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACT 304
|| |||| ||| || |||||||| || ||| |||||||||||||||||||||
Sbjct 28456548 TTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCGCCACT 28456497
>seq2
Length=64235786
Score = 178 bits (196), Expect = 3e-42
Identities = 217/294 (74%), Gaps = 18/294 (6%)
Strand=Plus/Minus
Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72
||||| |||| ||||||| | || || ||||||| || |||||||||||||||| |||||
Sbjct 46887956 TCAGGCTTTCACCCATTGCGGAAAATTCCCCACTACTACCTCCCGTAGGAGTCTAGGCCG 46887897
Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132
|| || | ||||| |||||| | ||| ||||| | || | ||| |||| ||| ||||||
Sbjct 46887896 TGCCTTAATCCCAGTGTGGCTGATCATCCTCTTGGACCAGTTACTGATCATCGCCTTGGT 46887837
Query 133 GGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGC-GATAAATCT 191
|||||| ||||||||||| |||||| | ||||||||| || || || ||| |||
Sbjct 46887836 AAGCTATTGCCTCACCAACTAACTAATCAGTCGCGAGCCCCTCCTTGGGCGGATTCCTCT 46887777
Query 192 TTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTCCAAACG 251
|| ||| ||||| | || | ||||||||| | ||||||| |
Sbjct 46887776 TT------------TTGC--TCCTC--AACCTACGGGGTATTAGCAGCCATTTCCAACTG 46887733
Query 252 TTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACTA 305
|| |||| ||| || |||||||| || | | ||||||||||||||||| ||||
Sbjct 46887732 TTGTTCCCCTCCCAAGGGCAGGTT-CTTATGCGTTACTCACCCGTCCGCTACTA 46887680
>seq320
Length=36444
Score = 158 bits (174), Expect = 2e-36
Identities = 137/170 (81%), Gaps = 0/170 (0%)
Strand=Plus/Minus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | ||| | ||||| |||| ||||||| | || || ||||||| ||||||| |||||
Sbjct 25481 GGCATTGCTCCGTCAGGCTTTCACCCATTGCGGAAAATTCCCCACTACTGCCTCTCGTAG 25422
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
||||||||||||||||||||||| | |||||| | ||| |||||||| || ||||| ||
Sbjct 25421 GAGTCTGGGCCGTGTCTCAGTCCTAGTGTGGCTGATCATCCTCTCAGACCAGCTACTAAT 25362
Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGC 170
| ||| |||||| | ||| ||||||||||| |||||| | ||||||
Sbjct 25361 CATCGCCTTGGTAAGTTATCGCCTCACCAACTAGCTAATCAGATGCGAGC 25312
>seq11
Length=45509462
Score = 156 bits (172), Expect = 8e-36
Identities = 184/247 (74%), Gaps = 18/247 (7%)
Strand=Plus/Plus
Query 47 GCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCA 106
||||||||||||||||||||||||||||||||||||||| |||||| | ||| ||||||
Sbjct 19770425 GCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCG 19770484
Query 107 GTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGC 166
| || ||||| |||| ||| |||||| |||||| ||||||||||| |||||| | |||
Sbjct 19770485 GACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGC 19770544
Query 167 GAGCCCATCTTTCAGC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTAT 225
||||| || | || ||| || || ||| ||||| | | ||
Sbjct 19770545 AAGCCCCTCCTCGGGCGGATTCCTCCTT------------TTGC--TCCTCAGCC--TAC 19770588
Query 226 GCGGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGT 285
| ||||||||| |||||||| ||| |||| ||| || |||||||| || ||| ||
Sbjct 19770589 GGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGT 19770647
Query 286 TACTCAC 292
|||||||
Sbjct 19770648 TACTCAC 19770654
>seq5
Length=74729908
Score = 154 bits (170), Expect = 3e-35
Identities = 139/175 (79%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | ||| ||||||| |||| ||||||| | || || ||||||||||||||| |||||
Sbjct 8711763 GGCATTGCTCCATCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCTCGTAG 8711822
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
|||| |||||| ||| ||||||| | |||||| | ||| |||||||| || ||||| ||
Sbjct 8711823 GAGTTTGGGCCATGTATCAGTCCTAGTGTGGCTGATCATCCTCTCAGACCAGCTACTAAT 8711882
Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATC 175
| ||| |||||| | ||| ||||||||||| ||||| | |||||||| ||
Sbjct 8711883 CATCGCCTTGGTAAGTTATCGCCTCACCAACTAGCTAATTAGATGCGAGCCCCTC 8711937
Score = 78.8 bits (86), Expect = 2e-12
Identities = 55/63 (87%), Gaps = 0/63 (0%)
Strand=Plus/Minus
Query 11 CATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGC 70
||||||| |||| | ||||||| || || |||||||| |||||||||||||||| |||||
Sbjct 11597035 CATCAGGCTTTCACTCATTGTGGAAAATTCCCCACTGTTGCCTCCCGTAGGAGTATGGGC 11596976
Query 71 CGT 73
|||
Sbjct 11596975 CGT 11596973
Score = 73.4 bits (80), Expect = 8e-11
Identities = 63/77 (82%), Gaps = 1/77 (1%)
Strand=Plus/Plus
Query 228 GGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTA 287
||||||||| |||||||| ||| |||| ||| || |||||||| || ||| ||||
Sbjct 58270541 GGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTA 58270599
Query 288 CTCACCCGTCCGCCACT 304
|||||||||||||||||
Sbjct 58270600 CTCACCCGTCCGCCACT 58270616
>seq23
Length=625428
Score = 147 bits (162), Expect = 4e-33
Identities = 202/281 (72%), Gaps = 16/281 (6%)
Strand=Plus/Minus
Query 24 CCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCC 83
||||||| | || || ||||| | ||||||||||||||||||||||| ||||||||| ||
Sbjct 541610 CCCATTGCGGAAAATTCCCCATTACTGCCTCCCGTAGGAGTCTGGGCTGTGTCTCAGCCC 541551
Query 84 CAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATC 143
|| |||| || ||| ||| |||| | ||||| ||| | |||||| | ||| || |
Sbjct 541550 CAGTGTGACCAATCATCCTTTCAGACTAGCTACTGATTATTGGCTTGTTAAGCTGTTGCC 541491
Query 144 TCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCGATAAATCTTTGGTCAAAGAA 203
|||||||||| ||||| | |||| ||| || || | || | || | | |
Sbjct 541490 TCACCAACTAATTAATCAGATGCGAACCCCTCCTT--GGGAGGATTCCTCCTTTTA---- 541437
Query 204 TGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCT 263
||||| | | |||| |||||||| |||||||||| |||||||| |||
Sbjct 541436 -------CTCCTCAGCC--TATGGAGTATTAGCAGTCGTTTCCAACTGTTATTCCTCTCC 541386
Query 264 GAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACT 304
|| |||| ||| || | | ||||||||| |||||||||||
Sbjct 541385 CAAGGGCAAGTT-CTTATGCGTTACTCACTCGTCCGCCACT 541346
>seq3
Length=80079441
Score = 138 bits (152), Expect = 2e-30
Identities = 117/144 (81%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 28 TTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAAT 87
||| | || || |||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 55014275 TTGCGGAAAATTCCCCACTGCTACCTCCCATAGGAGTCTGGGCCGTGTCTCAGTCCCAAT 55014216
Query 88 GTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCAC 147
||||| | ||| |||||| | | |||| |||| || |||||| ||||| |||||
Sbjct 55014215 GTGGCTGATCATCCTCTCGGACTAGCTATTGATCATCACCTTGGTAAGCTATGGCCTCAC 55014156
Query 148 CAACTACCTAATCGGCCGCGAGCC 171
|||||| ||||| | ||||||||
Sbjct 55014155 CAACTAGCTAATTAGACGCGAGCC 55014132
Score = 109 bits (120), Expect = 1e-21
Identities = 83/98 (85%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||
Sbjct 16238546 GGCATTGCTCCGTCAGGCTTTCACCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAT 16238605
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCA 98
||||||||||||||||||| ||||| |||||| | |||
Sbjct 16238606 GAGTCTGGGCCGTGTCTCACTCCCAGTGTGGCTGATCA 16238643
Score = 91.5 bits (100), Expect = 3e-16
Identities = 91/118 (77%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 15 AGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTG 74
||| |||||||||||| || || ||| | |||| |||||| || ||||||| ||||||
Sbjct 31054031 AGGCTTTCCCCCATTGCAGAAAATTCCCTATTGCTACCTCCCATAAGAGTCTGAGCCGTG 31053972
Query 75 TCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132
||| |||| ||||||||| ||| || ||||| || ||| |||| | | ||||||
Sbjct 31053971 TCTTAGTCTCAATGTGGCTAATCATCCACTCAGACCAATTACTGATCATTGCCTTGGT 31053914
>seq549
Length=23015
Score = 125 bits (138), Expect = 1e-26
Identities = 114/144 (79%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 28 TTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAAT 87
||| | || || |||||||||| ||||| |||||||||||||| ||||||||||||| |
Sbjct 13733 TTGCGGAAAATTCCCCACTGCTACCTCCTATAGGAGTCTGGGCCATGTCTCAGTCCCAGT 13792
Query 88 GTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCAC 147
||||| | ||| |||||| | | |||| ||||| ||| |||||| | ||| |||||
Sbjct 13793 GTGGCTGATCATCCTCTCGGACTAGCTATCGATCATCGCCTTGGTAAGTTATGGCCTCAC 13852
Query 148 CAACTACCTAATCGGCCGCGAGCC 171
|||||| ||||| | ||| ||||
Sbjct 13853 CAACTAGCTAATTAGACGCAAGCC 13876
>seq7
Length=52445601
Score = 96.9 bits (106), Expect = 7e-18
Identities = 103/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 24 CCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCC 83
|||||||| ||| || ||||||||||||| ||||| ||||| ||| ||||||||||||
Sbjct 51753487 CCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGAGAGTCCAGGCTGTGTCTCAGTCC 51753546
Query 84 CAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATC 143
|| |||||| | ||| | || || |||| ||| | |||||||| || || |
Sbjct 51753547 CATTGTGGCTGATCATCTGAAAAGGCCAGCTAAGCATCATTGGCTTGGTCAGCCTTTGCC 51753606
Query 144 TCACCAACTACCTAAT 159
| | ||||||||||||
Sbjct 51753607 TGATCAACTACCTAAT 51753622
>seq10
Length=39358841
Score = 73.4 bits (80), Expect = 8e-11
Identities = 63/77 (82%), Gaps = 1/77 (1%)
Strand=Plus/Plus
Query 228 GGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTA 287
||||||||| |||||||| ||| |||| ||| || |||||||| || ||| ||||
Sbjct 34345198 GGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTA 34345256
Query 288 CTCACCCGTCCGCCACT 304
|||||||||||||||||
Sbjct 34345257 CTCACCCGTCCGCCACT 34345273
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 998350569216
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