Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02]
4,951 sequences; 691,429,809 total letters
Query= AAMG01001844.1
Length=290
Score E
Sequences producing significant alignments: (Bits) Value
seq4951 167 4e-39
seq1 100 5e-19
seq320 96.9 6e-18
seq11 89.7 9e-16
seq9 84.2 4e-14
seq7 75.2 2e-11
seq428 73.4 7e-11
seq2 73.4 7e-11
>seq4951
Length=160137
Score = 167 bits (184), Expect = 4e-39
Identities = 208/285 (73%), Gaps = 0/285 (0%)
Strand=Plus/Minus
Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65
|||||||| ||||| |||||| | | |||||| || |||||| |||||||| |
Sbjct 106262 GCTTTCGCCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 106203
Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125
| || |||||||||||||||||| ||| | |||||| |||| || | | |||| ||
Sbjct 106202 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 106143
Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185
|||||| | || | ||||||||||| | ||| || | |||||
Sbjct 106142 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAA 106083
Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245
|| |||||| | |||||| |||||| | |||||||||||||||| ||| ||||||
Sbjct 106082 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTATTA 106023
Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290
|||||||||||||||| ||||||||| ||||||||| ||| ||
Sbjct 106022 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 105978
Score = 167 bits (184), Expect = 4e-39
Identities = 208/285 (73%), Gaps = 0/285 (0%)
Strand=Plus/Plus
Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65
|||||||| ||||| |||||| | | |||||| || |||||| |||||||| |
Sbjct 142748 GCTTTCGCCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 142807
Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125
| || |||||||||||||||||| ||| | |||||| |||| || | | |||| ||
Sbjct 142808 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 142867
Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185
|||||| | || | ||||||||||| | ||| || | |||||
Sbjct 142868 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAA 142927
Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245
|| |||||| | |||||| |||||| | |||||||||||||||| ||| ||||||
Sbjct 142928 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTATTA 142987
Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290
|||||||||||||||| ||||||||| ||||||||| ||| ||
Sbjct 142988 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 143032
>seq1
Length=40297282
Score = 100 bits (110), Expect = 5e-19
Identities = 76/90 (84%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 201 CTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCA 260
|||||| |||||| | |||||||||||||||| || |||||||||||||||||||||
Sbjct 3755391 CTTTACGCCCAATCATTCCGGATAACGCTTGCATTCTCTGTATTACCGCGGCTGCTGGCA 3755450
Query 261 CGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290
| ||||||||| ||||||||| ||| ||
Sbjct 3755451 CAGAGTTAGCCGATGCTTATTCCCCAGATA 3755480
>seq320
Length=36444
Score = 96.9 bits (106), Expect = 6e-18
Identities = 83/103 (81%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247
|| |||||| | |||||| ||||| | ||| |||||||||||| ||| ||||||||
Sbjct 25645 CCACCTACAGACGCTTTACGTCCAATCATTCCAGATAACGCTTGCATCCTCTGTATTACC 25586
Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290
|||||| ||||||| ||||||||| ||||||||| ||| ||
Sbjct 25585 GCGGCTACTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 25543
>seq11
Length=45509462
Score = 89.7 bits (98), Expect = 9e-16
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 217 TCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGC 276
|||||||||||||||| ||| |||||||||||||||||||||| ||||||||| ||
Sbjct 19774087 TCCGGATAACGCTTGCATCCTCTGTATTACCGCGGCTGCTGGCACAGAGTTAGCCGATGC 19774146
Query 277 TTATTCCTCAGGTA 290
||||||| ||| ||
Sbjct 19774147 TTATTCCCCAGATA 19774160
>seq9
Length=39018107
Score = 84.2 bits (92), Expect = 4e-14
Identities = 76/96 (79%), Gaps = 0/96 (0%)
Strand=Plus/Minus
Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247
||||||| | | |||||| || ||| | |||| ||||| |||| ||| |||||||
Sbjct 964707 CCGCCTATAGACACTTTACGCCAAATCATTCCGAATAACACTTGTATCCTTTATATTACC 964648
Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCC 283
|||||||||||||| ||||||||| |||||||||
Sbjct 964647 GCGGCTGCTGGCACTGAGTTAGCCGATGCTTATTCC 964612
Score = 84.2 bits (92), Expect = 4e-14
Identities = 76/96 (79%), Gaps = 0/96 (0%)
Strand=Plus/Minus
Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247
||||||||| | |||||| || ||| | |||| |||||||||| ||| |||||| |
Sbjct 2019182 CCGCCTACAGACACTTTACGCCAAATCATTCCGAATAACGCTTGTATCCTCTGTATTATC 2019123
Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCC 283
| |||||||||||| ||||||| | |||||||||
Sbjct 2019122 GTGGCTGCTGGCACTGAGTTAGCTGATGCTTATTCC 2019087
>seq7
Length=52445601
Score = 75.2 bits (82), Expect = 2e-11
Identities = 71/91 (78%), Gaps = 0/91 (0%)
Strand=Plus/Minus
Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247
|| || |||| | |||||| ||| || | ||||||||||||||||| || ||||||||
Sbjct 35442680 CCACCCACACACACTTTACGCCCTATCATTCCGGATAACGCTTGCCTTCTTTGTATTACC 35442621
Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTT 278
| |||| |||||| | ||||||| ||||
Sbjct 35442620 GTAGCTGTTGGCACAAATTTAGCCGATGCTT 35442590
>seq428
Length=28134
Score = 73.4 bits (80), Expect = 7e-11
Identities = 75/98 (77%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65
|||||||| ||||| |||||| | | |||||| || |||||| |||||||| |
Sbjct 3158 GCTTTCGCCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 3217
Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCC 103
| || |||||||||||||||||| ||| | ||||||
Sbjct 3218 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCC 3255
>seq2
Length=64235786
Score = 73.4 bits (80), Expect = 7e-11
Identities = 67/86 (78%), Gaps = 8/86 (9%)
Strand=Plus/Minus
Query 205 ACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTA 264
||||||||| | ||| |||||| ||||| ||||||||||||||||| ||| |
Sbjct 1926491 ACACCCAATCATTCCAGATAACACTTGC--------TATTACCGCGGCTGCTGACACAGA 1926440
Query 265 GTTAGCCGTGGCTTATTCCTCAGGTA 290
|||||||| ||||||||| ||| ||
Sbjct 1926439 GTTAGCCGATGCTTATTCCCCAGATA 1926414
Score = 73.4 bits (80), Expect = 7e-11
Identities = 66/83 (80%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 201 CTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCA 260
|||||| |||||| | |||||||||||||| ||| |||||||| | | ||||||||
Sbjct 1970471 CTTTACGCCCAATCATCTCGGATAACGCTTGCATCCTCTGTATTACCACAGTTGCTGGCA 1970412
Query 261 CGTAGTTAGCCGTGGCTTATTCC 283
| |||||| || |||||||||
Sbjct 1970411 CAGAGTTAGTCGATGCTTATTCC 1970389
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 828760248421
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |