Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq4951 167 4e-39 seq1 100 5e-19 seq320 96.9 6e-18 seq11 89.7 9e-16 seq9 84.2 4e-14 seq7 75.2 2e-11 seq428 73.4 7e-11 seq2 73.4 7e-11 >seq4951 Length=160137 Score = 167 bits (184), Expect = 4e-39 Identities = 208/285 (73%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 |||||||| ||||| |||||| | | |||||| || |||||| |||||||| | Sbjct 106262 GCTTTCGCCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 106203 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||||| ||| | |||||| |||| || | | |||| || Sbjct 106202 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 106143 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | || | ||||||||||| | ||| || | ||||| Sbjct 106142 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAA 106083 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| |||||| | |||||||||||||||| ||| |||||| Sbjct 106082 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTATTA 106023 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||| ||||||||| ||||||||| ||| || Sbjct 106022 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 105978 Score = 167 bits (184), Expect = 4e-39 Identities = 208/285 (73%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 |||||||| ||||| |||||| | | |||||| || |||||| |||||||| | Sbjct 142748 GCTTTCGCCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 142807 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||||| ||| | |||||| |||| || | | |||| || Sbjct 142808 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 142867 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | || | ||||||||||| | ||| || | ||||| Sbjct 142868 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAA 142927 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| |||||| | |||||||||||||||| ||| |||||| Sbjct 142928 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTATTA 142987 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||| ||||||||| ||||||||| ||| || Sbjct 142988 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 143032 >seq1 Length=40297282 Score = 100 bits (110), Expect = 5e-19 Identities = 76/90 (84%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 201 CTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCA 260 |||||| |||||| | |||||||||||||||| || ||||||||||||||||||||| Sbjct 3755391 CTTTACGCCCAATCATTCCGGATAACGCTTGCATTCTCTGTATTACCGCGGCTGCTGGCA 3755450 Query 261 CGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 | ||||||||| ||||||||| ||| || Sbjct 3755451 CAGAGTTAGCCGATGCTTATTCCCCAGATA 3755480 >seq320 Length=36444 Score = 96.9 bits (106), Expect = 6e-18 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || |||||| | |||||| ||||| | ||| |||||||||||| ||| |||||||| Sbjct 25645 CCACCTACAGACGCTTTACGTCCAATCATTCCAGATAACGCTTGCATCCTCTGTATTACC 25586 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||| ||||||| ||||||||| ||||||||| ||| || Sbjct 25585 GCGGCTACTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 25543 >seq11 Length=45509462 Score = 89.7 bits (98), Expect = 9e-16 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 217 TCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGC 276 |||||||||||||||| ||| |||||||||||||||||||||| ||||||||| || Sbjct 19774087 TCCGGATAACGCTTGCATCCTCTGTATTACCGCGGCTGCTGGCACAGAGTTAGCCGATGC 19774146 Query 277 TTATTCCTCAGGTA 290 ||||||| ||| || Sbjct 19774147 TTATTCCCCAGATA 19774160 >seq9 Length=39018107 Score = 84.2 bits (92), Expect = 4e-14 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 ||||||| | | |||||| || ||| | |||| ||||| |||| ||| ||||||| Sbjct 964707 CCGCCTATAGACACTTTACGCCAAATCATTCCGAATAACACTTGTATCCTTTATATTACC 964648 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCC 283 |||||||||||||| ||||||||| ||||||||| Sbjct 964647 GCGGCTGCTGGCACTGAGTTAGCCGATGCTTATTCC 964612 Score = 84.2 bits (92), Expect = 4e-14 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 ||||||||| | |||||| || ||| | |||| |||||||||| ||| |||||| | Sbjct 2019182 CCGCCTACAGACACTTTACGCCAAATCATTCCGAATAACGCTTGTATCCTCTGTATTATC 2019123 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCC 283 | |||||||||||| ||||||| | ||||||||| Sbjct 2019122 GTGGCTGCTGGCACTGAGTTAGCTGATGCTTATTCC 2019087 >seq7 Length=52445601 Score = 75.2 bits (82), Expect = 2e-11 Identities = 71/91 (78%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || || |||| | |||||| ||| || | ||||||||||||||||| || |||||||| Sbjct 35442680 CCACCCACACACACTTTACGCCCTATCATTCCGGATAACGCTTGCCTTCTTTGTATTACC 35442621 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTT 278 | |||| |||||| | ||||||| |||| Sbjct 35442620 GTAGCTGTTGGCACAAATTTAGCCGATGCTT 35442590 >seq428 Length=28134 Score = 73.4 bits (80), Expect = 7e-11 Identities = 75/98 (77%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 |||||||| ||||| |||||| | | |||||| || |||||| |||||||| | Sbjct 3158 GCTTTCGCCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 3217 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCC 103 | || |||||||||||||||||| ||| | |||||| Sbjct 3218 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCC 3255 >seq2 Length=64235786 Score = 73.4 bits (80), Expect = 7e-11 Identities = 67/86 (78%), Gaps = 8/86 (9%) Strand=Plus/Minus Query 205 ACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTA 264 ||||||||| | ||| |||||| ||||| ||||||||||||||||| ||| | Sbjct 1926491 ACACCCAATCATTCCAGATAACACTTGC--------TATTACCGCGGCTGCTGACACAGA 1926440 Query 265 GTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||| ||||||||| ||| || Sbjct 1926439 GTTAGCCGATGCTTATTCCCCAGATA 1926414 Score = 73.4 bits (80), Expect = 7e-11 Identities = 66/83 (80%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 201 CTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCA 260 |||||| |||||| | |||||||||||||| ||| |||||||| | | |||||||| Sbjct 1970471 CTTTACGCCCAATCATCTCGGATAACGCTTGCATCCTCTGTATTACCACAGTTGCTGGCA 1970412 Query 261 CGTAGTTAGCCGTGGCTTATTCC 283 | |||||| || ||||||||| Sbjct 1970411 CAGAGTTAGTCGATGCTTATTCC 1970389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828760248421