Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq4951 268 1e-69 seq10 87.8 3e-15 seq2552 84.2 3e-14 seq9 80.6 4e-13 seq2 80.6 4e-13 seq3 73.4 6e-11 >seq4951 Length=160137 Score = 268 bits (296), Expect = 1e-69 Identities = 224/273 (82%), Gaps = 1/273 (0%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||||| |||||| ||| |||| ||| |||||| Sbjct 112244 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 112185 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 112184 TTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 112125 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| |||||| ||||||||||||||| || Sbjct 112124 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 112065 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || | Sbjct 112064 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 112005 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| |||||||||| | || |||||||||||| Sbjct 112004 ACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 111972 Score = 268 bits (296), Expect = 1e-69 Identities = 224/273 (82%), Gaps = 1/273 (0%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||||| |||||| ||| |||| ||| |||||| Sbjct 136766 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 136825 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 136826 TTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 136885 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| |||||| ||||||||||||||| || Sbjct 136886 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 136945 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || | Sbjct 136946 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 137005 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| |||||||||| | || |||||||||||| Sbjct 137006 ACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 137038 >seq10 Length=39358841 Score = 87.8 bits (96), Expect = 3e-15 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 185 GTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTAC 244 ||||| |||||| ||| ||| || |||| || |||||||| || ||||||||||| | Sbjct 25771386 GTTCTAAACCCAACTCACGTACCACTTTGATCGGCGAACAACCGAACCCTTGGGAACCTT 25771445 Query 245 TTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||| |||||||||| || ||| |||||||| Sbjct 25771446 TTCACCCCCAGGATGTGATGAGTCGACATCG 25771476 >seq2552 Length=5665 Score = 84.2 bits (92), Expect = 3e-14 Identities = 104/142 (73%), Gaps = 4/142 (3%) Strand=Plus/Plus Query 102 CCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCC----TACGCCCACGA 157 ||| ||| |||||||||||||| || |||||| ||| | ||| ||| || || Sbjct 1176 CCAACCCAGTCCTCTCGTACTAGGGTTGGCTCCTTCCAATTCTCCCTTTTACACCAACAG 1235 Query 158 CGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGG 217 |||||| ||||||| ||||| | ||||||| |||||| ||| | | || | || || Sbjct 1236 TAGATAGGAACCGAACCGTCTCACAACGTTCTTAACCCAACTCACATACCACCTTGATCA 1295 Query 218 GCGAACAGCCCAACCCTTGGGA 239 |||| | || ||||||||||| Sbjct 1296 ACGAATAACCAAACCCTTGGGA 1317 >seq9 Length=39018107 Score = 80.6 bits (88), Expect = 4e-13 Identities = 103/142 (73%), Gaps = 4/142 (3%) Strand=Plus/Plus Query 102 CCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCC----TACGCCCACGA 157 ||| ||| |||||||||||||| || |||||| ||| | ||| ||| || || Sbjct 8409639 CCAACCCAGTCCTCTCGTACTAGGGTTGGCTCCTTCCAATTCTCCCTTTTACACCAACAG 8409698 Query 158 CGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGG 217 |||||| ||||||| ||||| | || |||| |||||| ||| || || | || || Sbjct 8409699 TAGATAGGAACCGAACCGTCTCACAACATTCTTAACCCAACTCATGTACCACCTTGATCA 8409758 Query 218 GCGAACAGCCCAACCCTTGGGA 239 |||| | || ||||||||||| Sbjct 8409759 ACGAATAACCAAACCCTTGGGA 8409780 >seq2 Length=64235786 Score = 80.6 bits (88), Expect = 4e-13 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 165 GGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGA 221 ||||||||||||||| ||||||| |||||||||||| ||| || ||||||||||||| Sbjct 24140824 GGACCGAACTGTCTCACGACGTTTTGAACCCAGCTCACGTACCGCTTTAATGGGCGA 24140880 Score = 78.8 bits (86), Expect = 1e-12 Identities = 73/93 (78%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 133 CCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAA 192 |||||||| || | |||||| || ||| |||| | || ||||| |||| ||||||| Sbjct 46900788 CCTCTCAATGCTCTAATGCCCACACCGAATATGGACTGGACCGTCTCACGACATTCTGAA 46900847 Query 193 CCCAGCTCGCGTGCCTCTTTAATGGGCGAACAG 225 ||||||| |||| || ||||||||||| || || Sbjct 46900848 CCCAGCTTGCGTACCACTTTAATGGGCAAAAAG 46900880 Score = 78.8 bits (86), Expect = 1e-12 Identities = 73/93 (78%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 133 CCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAA 192 |||||||| || | |||||| || ||| |||| | || ||||| |||| ||||||| Sbjct 46929305 CCTCTCAATGCTCTAATGCCCACACCGAATATGGACTGGACCGTCTCACGACATTCTGAA 46929364 Query 193 CCCAGCTCGCGTGCCTCTTTAATGGGCGAACAG 225 ||||||| |||| || ||||||||||| || || Sbjct 46929365 CCCAGCTTGCGTACCACTTTAATGGGCAAAAAG 46929397 Score = 73.4 bits (80), Expect = 6e-11 Identities = 59/70 (84%), Gaps = 1/70 (1%) Strand=Plus/Minus Query 187 TCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTT 246 ||||||||||||| | || | ||||||||| |||||||||||||| |||| || |||| Sbjct 43600701 TCTGAACCCAGCTTGTGTACTGCTTTAATGG-CGAACAGCCCAACCTTTGGAACATACTA 43600643 Query 247 CAGCCCCAGG 256 ||||||||| Sbjct 43600642 TAGCCCCAGG 43600633 >seq3 Length=80079441 Score = 73.4 bits (80), Expect = 6e-11 Identities = 64/80 (80%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 47 AACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATC 106 ||||||||| ||| ||| ||| |||||| ||||||||| | ||| ||||| | ||| | Sbjct 66883240 AACTTAGCTGCCCGGCTTTGCTATTGGCATAACAACTGGTACGCCATAGGTTGGCCCAAC 66883299 Query 107 CCGGTCCTCTCGTACTAAGG 126 | |||||||||||||| || Sbjct 66883300 CTAGTCCTCTCGTACTAGGG 66883319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780762550636