Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02]
4,951 sequences; 691,429,809 total letters
Query= AAMG01001962.1
Length=275
Score E
Sequences producing significant alignments: (Bits) Value
seq4951 268 1e-69
seq10 87.8 3e-15
seq2552 84.2 3e-14
seq9 80.6 4e-13
seq2 80.6 4e-13
seq3 73.4 6e-11
>seq4951
Length=160137
Score = 268 bits (296), Expect = 1e-69
Identities = 224/273 (82%), Gaps = 1/273 (0%)
Strand=Plus/Minus
Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62
|| |||||| ||||||||| |||||| |||||| ||| |||| ||| ||||||
Sbjct 112244 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 112185
Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122
| | | | |||| | ||||||| |||||||||| |||| ||||||||||||||||||
Sbjct 112184 TTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 112125
Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182
| ||| || ||||||||| || |||||||| |||||| ||||||||||||||| ||
Sbjct 112124 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 112065
Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242
|||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || |
Sbjct 112064 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 112005
Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275
||| |||||||||| | || ||||||||||||
Sbjct 112004 ACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 111972
Score = 268 bits (296), Expect = 1e-69
Identities = 224/273 (82%), Gaps = 1/273 (0%)
Strand=Plus/Plus
Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62
|| |||||| ||||||||| |||||| |||||| ||| |||| ||| ||||||
Sbjct 136766 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 136825
Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122
| | | | |||| | ||||||| |||||||||| |||| ||||||||||||||||||
Sbjct 136826 TTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 136885
Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182
| ||| || ||||||||| || |||||||| |||||| ||||||||||||||| ||
Sbjct 136886 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 136945
Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242
|||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || |
Sbjct 136946 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 137005
Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275
||| |||||||||| | || ||||||||||||
Sbjct 137006 ACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 137038
>seq10
Length=39358841
Score = 87.8 bits (96), Expect = 3e-15
Identities = 74/91 (81%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 185 GTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTAC 244
||||| |||||| ||| ||| || |||| || |||||||| || ||||||||||| |
Sbjct 25771386 GTTCTAAACCCAACTCACGTACCACTTTGATCGGCGAACAACCGAACCCTTGGGAACCTT 25771445
Query 245 TTCAGCCCCAGGATGAGACGAGCCGACATCG 275
|||| |||||||||| || ||| ||||||||
Sbjct 25771446 TTCACCCCCAGGATGTGATGAGTCGACATCG 25771476
>seq2552
Length=5665
Score = 84.2 bits (92), Expect = 3e-14
Identities = 104/142 (73%), Gaps = 4/142 (3%)
Strand=Plus/Plus
Query 102 CCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCC----TACGCCCACGA 157
||| ||| |||||||||||||| || |||||| ||| | ||| ||| || ||
Sbjct 1176 CCAACCCAGTCCTCTCGTACTAGGGTTGGCTCCTTCCAATTCTCCCTTTTACACCAACAG 1235
Query 158 CGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGG 217
|||||| ||||||| ||||| | ||||||| |||||| ||| | | || | || ||
Sbjct 1236 TAGATAGGAACCGAACCGTCTCACAACGTTCTTAACCCAACTCACATACCACCTTGATCA 1295
Query 218 GCGAACAGCCCAACCCTTGGGA 239
|||| | || |||||||||||
Sbjct 1296 ACGAATAACCAAACCCTTGGGA 1317
>seq9
Length=39018107
Score = 80.6 bits (88), Expect = 4e-13
Identities = 103/142 (73%), Gaps = 4/142 (3%)
Strand=Plus/Plus
Query 102 CCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCC----TACGCCCACGA 157
||| ||| |||||||||||||| || |||||| ||| | ||| ||| || ||
Sbjct 8409639 CCAACCCAGTCCTCTCGTACTAGGGTTGGCTCCTTCCAATTCTCCCTTTTACACCAACAG 8409698
Query 158 CGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGG 217
|||||| ||||||| ||||| | || |||| |||||| ||| || || | || ||
Sbjct 8409699 TAGATAGGAACCGAACCGTCTCACAACATTCTTAACCCAACTCATGTACCACCTTGATCA 8409758
Query 218 GCGAACAGCCCAACCCTTGGGA 239
|||| | || |||||||||||
Sbjct 8409759 ACGAATAACCAAACCCTTGGGA 8409780
>seq2
Length=64235786
Score = 80.6 bits (88), Expect = 4e-13
Identities = 52/57 (91%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 165 GGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGA 221
||||||||||||||| ||||||| |||||||||||| ||| || |||||||||||||
Sbjct 24140824 GGACCGAACTGTCTCACGACGTTTTGAACCCAGCTCACGTACCGCTTTAATGGGCGA 24140880
Score = 78.8 bits (86), Expect = 1e-12
Identities = 73/93 (78%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 133 CCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAA 192
|||||||| || | |||||| || ||| |||| | || ||||| |||| |||||||
Sbjct 46900788 CCTCTCAATGCTCTAATGCCCACACCGAATATGGACTGGACCGTCTCACGACATTCTGAA 46900847
Query 193 CCCAGCTCGCGTGCCTCTTTAATGGGCGAACAG 225
||||||| |||| || ||||||||||| || ||
Sbjct 46900848 CCCAGCTTGCGTACCACTTTAATGGGCAAAAAG 46900880
Score = 78.8 bits (86), Expect = 1e-12
Identities = 73/93 (78%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 133 CCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAA 192
|||||||| || | |||||| || ||| |||| | || ||||| |||| |||||||
Sbjct 46929305 CCTCTCAATGCTCTAATGCCCACACCGAATATGGACTGGACCGTCTCACGACATTCTGAA 46929364
Query 193 CCCAGCTCGCGTGCCTCTTTAATGGGCGAACAG 225
||||||| |||| || ||||||||||| || ||
Sbjct 46929365 CCCAGCTTGCGTACCACTTTAATGGGCAAAAAG 46929397
Score = 73.4 bits (80), Expect = 6e-11
Identities = 59/70 (84%), Gaps = 1/70 (1%)
Strand=Plus/Minus
Query 187 TCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTT 246
||||||||||||| | || | ||||||||| |||||||||||||| |||| || ||||
Sbjct 43600701 TCTGAACCCAGCTTGTGTACTGCTTTAATGG-CGAACAGCCCAACCTTTGGAACATACTA 43600643
Query 247 CAGCCCCAGG 256
|||||||||
Sbjct 43600642 TAGCCCCAGG 43600633
>seq3
Length=80079441
Score = 73.4 bits (80), Expect = 6e-11
Identities = 64/80 (80%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 47 AACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATC 106
||||||||| ||| ||| ||| |||||| ||||||||| | ||| ||||| | ||| |
Sbjct 66883240 AACTTAGCTGCCCGGCTTTGCTATTGGCATAACAACTGGTACGCCATAGGTTGGCCCAAC 66883299
Query 107 CCGGTCCTCTCGTACTAAGG 126
| |||||||||||||| ||
Sbjct 66883300 CTAGTCCTCTCGTACTAGGG 66883319
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 780762550636
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |