Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02]
4,951 sequences; 691,429,809 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq2 313 5e-83
seq17 300 3e-79
seq7 284 2e-74
seq10 206 5e-51
seq9 168 1e-39
seq38 100 5e-19
>seq2
Length=64235786
Score = 313 bits (346), Expect = 5e-83
Identities = 230/264 (87%), Gaps = 4/264 (2%)
Strand=Plus/Minus
Query 67 GCCGGCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGG 124
||| |||||||||||||||||| | ||| | ||| | ||||||||||||||||||||||
Sbjct 26407075 GCCAGCTTCTTAGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAGG 26407017
Query 125 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT 184
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 26407016 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGT 26406957
Query 185 TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGA 244
|| ||||||||| ||| |||||||||||| | ||| | ||||| ||||||||||
Sbjct 26406956 CTATAGCCTTGGCCGACAGGCCTGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGA 26406898
Query 245 GCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCG 304
|||||||||| ||| ||||||||||||||| ||||||||||||| ||||||||| ||||
Sbjct 26406897 TCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCG 26406838
Query 305 TTGATTACGTCCCTGCCCTTTGTA 328
|||| |||||||||||||||||||
Sbjct 26406837 TTGACTACGTCCCTGCCCTTTGTA 26406814
Score = 313 bits (346), Expect = 5e-83
Identities = 230/264 (87%), Gaps = 4/264 (2%)
Strand=Plus/Minus
Query 67 GCCGGCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGG 124
||| |||||||||||||||||| | ||| | ||| | ||||||||||||||||||||||
Sbjct 26444692 GCCAGCTTCTTAGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAGG 26444634
Query 125 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT 184
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 26444633 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGT 26444574
Query 185 TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGA 244
|| ||||||||| ||| |||||||||||| | ||| | ||||| ||||||||||
Sbjct 26444573 CTATAGCCTTGGCCGACAGGCCTGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGA 26444515
Query 245 GCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCG 304
|||||||||| ||| ||||||||||||||| ||||||||||||| ||||||||| ||||
Sbjct 26444514 TCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCG 26444455
Query 305 TTGATTACGTCCCTGCCCTTTGTA 328
|||| |||||||||||||||||||
Sbjct 26444454 TTGACTACGTCCCTGCCCTTTGTA 26444431
Score = 273 bits (302), Expect = 4e-71
Identities = 224/264 (85%), Gaps = 10/264 (4%)
Strand=Plus/Minus
Query 67 GCCGGCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGG 124
||| |||||||||||||||||| | ||| | ||| | ||||||| ||||||||||||||
Sbjct 26397396 GCCAGCTTCTTAGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTT-GAGGCAATAACAGG 26397339
Query 125 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT 184
||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 26397338 TCTGTGATGCC-TTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGT 26397280
Query 185 TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGA 244
|| | |||||| ||| |||||||||||| | || | ||||| ||||||||||
Sbjct 26397279 CTATAGC--TGGCCGACAGGCCTGGGTAATCTT--TGAATTTCATCGTGATGGGGATAGA 26397224
Query 245 GCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCG 304
|||||||||| ||| |||||| |||||||| ||||||||||||| ||||||||| ||||
Sbjct 26397223 TCATTGCAATTGTTGGTCTTCA-CGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCG 26397165
Query 305 TTGATTACGTCCCTGCCCTTTGTA 328
|||| |||||||||||||||||||
Sbjct 26397164 TTGACTACGTCCCTGCCCTTTGTA 26397141
Score = 269 bits (298), Expect = 5e-70
Identities = 218/261 (84%), Gaps = 2/261 (1%)
Strand=Plus/Minus
Query 67 GCCGGCTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGT 125
||| | |||||||||||| ||| | | | || | | ||||||||| |||||||| ||||
Sbjct 26558342 GCCAGTTTCTTAGAGGGATTATGGCCGCTTAGTCCAAGGAAGTTTGGGGCAATAATAGGT 26558283
Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185
||||||||||||||||||||||||||||||| ||||||| ||||| | ||||||||
Sbjct 26558282 CTGTGATGCCCTTAGATGTTCTGGGCCGCACACGCGCTATACTGATGTATTCAACGAGTC 26558223
Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245
|| ||||||||| ||| |||||||||||| | ||| | ||||| ||| ||||||
Sbjct 26558222 TATAGCCTTGGCCGACAGGCCTGGGTAATCTT-TGAAATTTCATCGTGATGGAGATAGAT 26558164
Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305
|||||||||| ||| ||||||||||||||| ||||||||| ||| ||||||||| |||||
Sbjct 26558163 CATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGTGCGAGTCATCAGCTCGCGT 26558104
Query 306 TGATTACGTCCCTGCCCTTTG 326
||| |||||||||||||||||
Sbjct 26558103 TGACTACGTCCCTGCCCTTTG 26558083
>seq17
Length=836409
Score = 300 bits (332), Expect = 3e-79
Identities = 227/264 (86%), Gaps = 4/264 (2%)
Strand=Plus/Plus
Query 67 GCCGGCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGG 124
||| |||||||||||||||||| | ||| | ||| | ||||||||||||||||||||||
Sbjct 22040 GCCAGCTTCTTAGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAGG 22098
Query 125 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT 184
|||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||
Sbjct 22099 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACATTGATGTATTCAACGAGT 22158
Query 185 TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGA 244
|| ||||||||| ||| ||||||||| || | ||| | ||||| ||||||||||
Sbjct 22159 CTATAGCCTTGGCCGACAGGCCTGGGTAATGTT-TGAAATTTCATCGTGATGGGGATAGA 22217
Query 245 GCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCG 304
|||||||||| ||| ||||||||||||||| |||||||| |||| ||||||||| ||||
Sbjct 22218 TCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAACGCGAGTCATCAGCTCGCG 22277
Query 305 TTGATTACGTCCCTGCCCTTTGTA 328
|||| |||||||||||||||||||
Sbjct 22278 TTGACTACGTCCCTGCCCTTTGTA 22301
>seq7
Length=52445601
Score = 284 bits (314), Expect = 2e-74
Identities = 223/263 (85%), Gaps = 4/263 (2%)
Strand=Plus/Plus
Query 68 CCGGCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 125
|| |||||||||||||||||| | ||| ||||| | ||||||||||||||| |||||||
Sbjct 37651772 CCAGCTTCTTAGAGGGACTATGGCCGCTTAAGCCAA-GGAAGTTTGAGGCAACAACAGGT 37651830
Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185
|||||||||||||||||||||||||||||| ||| |||||||||| | ||||||||
Sbjct 37651831 CTGTGATGCCCTTAGATGTTCTGGGCCGCATGCGTGCTACACTGATGTATTCAACGAGTC 37651890
Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245
|| |||| || | ||| |||||||||||| | ||| | ||||| ||||||||||
Sbjct 37651891 TATAGCCTTAGCTGACAGGCCTGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGAT 37651949
Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305
|||||||||| ||| ||||||||||||||| ||||||||| ||| ||||||||| |||||
Sbjct 37651950 CATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGTGCGAGTCATCAGCTCGCGT 37652009
Query 306 TGATTACGTCCCTGCCCTTTGTA 328
||| ||||||| |||||||||||
Sbjct 37652010 TGACTACGTCCATGCCCTTTGTA 37652032
>seq10
Length=39358841
Score = 206 bits (228), Expect = 5e-51
Identities = 157/184 (85%), Gaps = 1/184 (1%)
Strand=Plus/Minus
Query 145 TCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGG 204
|||||||||||||||||||||||||| | |||||||| || ||||||||| |||
Sbjct 16384144 TCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGCCTTGGCCGACAGG 16384085
Query 205 TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTT 264
|| ||||||||| | ||| | ||||| |||||||||| |||||||||| ||| ||||
Sbjct 16384084 CCTAGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCAATTGTTGGTCTT 16384026
Query 265 CAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTT 324
||||||||||| ||||||||||||| ||||||||| |||||||| |||||||||||||||
Sbjct 16384025 CAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTT 16383966
Query 325 TGTA 328
||||
Sbjct 16383965 TGTA 16383962
>seq9
Length=39018107
Score = 168 bits (186), Expect = 1e-39
Identities = 128/150 (85%), Gaps = 1/150 (1%)
Strand=Plus/Plus
Query 179 ACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGG 238
|||||| || ||||||||| ||| || ||||||||| | ||| | ||||| ||||
Sbjct 33904826 ACGAGTCTATAGCCTTGGCCGACAGGCCTAGGTAATCTT-TGAAATTTCATCGTGATGGG 33904884
Query 239 GATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAG 298
|||||| |||||||||| ||| ||||||||||||||| ||||||||||||| ||||||||
Sbjct 33904885 GATAGATCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAG 33904944
Query 299 CACGCGTTGATTACGTCCCTGCCCTTTGTA 328
| |||||||| |||||||||||||||||||
Sbjct 33904945 CTCGCGTTGACTACGTCCCTGCCCTTTGTA 33904974
>seq38
Length=444919
Score = 100 bits (110), Expect = 5e-19
Identities = 88/103 (85%), Gaps = 5/103 (5%)
Strand=Plus/Minus
Query 228 GTCGTGCTGGGGATAGAGCAT-TGCAATTATTGCTCTTCAACGAGGAA-TGCCTAGTAAG 285
|||||| |||||||||| ||| ||||||| || |||||||||||||| | |||||||||
Sbjct 432769 GTCGTGATGGGGATAGATCATATGCAATTGGTGGTCTTCAACGAGGAATTCCCTAGTAAG 432710
Query 286 CG-CGTGTCATCAGCACGC-GTTGATTACGT-CCCTGCCCTTT 325
|| || ||||||| | ||| ||||| ||||| |||||||||||
Sbjct 432709 CGTCGAGTCATCATCTCGCGGTTGACTACGTCCCCTGCCCTTT 432667
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947153104128
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