Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq2 313 5e-83 seq17 300 3e-79 seq7 284 2e-74 seq10 206 5e-51 seq9 168 1e-39 seq38 100 5e-19 >seq2 Length=64235786 Score = 313 bits (346), Expect = 5e-83 Identities = 230/264 (87%), Gaps = 4/264 (2%) Strand=Plus/Minus Query 67 GCCGGCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGG 124 ||| |||||||||||||||||| | ||| | ||| | |||||||||||||||||||||| Sbjct 26407075 GCCAGCTTCTTAGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAGG 26407017 Query 125 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT 184 |||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 26407016 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGT 26406957 Query 185 TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGA 244 || ||||||||| ||| |||||||||||| | ||| | ||||| |||||||||| Sbjct 26406956 CTATAGCCTTGGCCGACAGGCCTGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGA 26406898 Query 245 GCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCG 304 |||||||||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||| Sbjct 26406897 TCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCG 26406838 Query 305 TTGATTACGTCCCTGCCCTTTGTA 328 |||| ||||||||||||||||||| Sbjct 26406837 TTGACTACGTCCCTGCCCTTTGTA 26406814 Score = 313 bits (346), Expect = 5e-83 Identities = 230/264 (87%), Gaps = 4/264 (2%) Strand=Plus/Minus Query 67 GCCGGCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGG 124 ||| |||||||||||||||||| | ||| | ||| | |||||||||||||||||||||| Sbjct 26444692 GCCAGCTTCTTAGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAGG 26444634 Query 125 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT 184 |||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 26444633 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGT 26444574 Query 185 TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGA 244 || ||||||||| ||| |||||||||||| | ||| | ||||| |||||||||| Sbjct 26444573 CTATAGCCTTGGCCGACAGGCCTGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGA 26444515 Query 245 GCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCG 304 |||||||||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||| Sbjct 26444514 TCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCG 26444455 Query 305 TTGATTACGTCCCTGCCCTTTGTA 328 |||| ||||||||||||||||||| Sbjct 26444454 TTGACTACGTCCCTGCCCTTTGTA 26444431 Score = 273 bits (302), Expect = 4e-71 Identities = 224/264 (85%), Gaps = 10/264 (4%) Strand=Plus/Minus Query 67 GCCGGCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGG 124 ||| |||||||||||||||||| | ||| | ||| | ||||||| |||||||||||||| Sbjct 26397396 GCCAGCTTCTTAGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTT-GAGGCAATAACAGG 26397339 Query 125 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT 184 ||||||||||| |||||||||||||||||||||||||||||||||| | |||||||| Sbjct 26397338 TCTGTGATGCC-TTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGT 26397280 Query 185 TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGA 244 || | |||||| ||| |||||||||||| | || | ||||| |||||||||| Sbjct 26397279 CTATAGC--TGGCCGACAGGCCTGGGTAATCTT--TGAATTTCATCGTGATGGGGATAGA 26397224 Query 245 GCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCG 304 |||||||||| ||| |||||| |||||||| ||||||||||||| ||||||||| |||| Sbjct 26397223 TCATTGCAATTGTTGGTCTTCA-CGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCG 26397165 Query 305 TTGATTACGTCCCTGCCCTTTGTA 328 |||| ||||||||||||||||||| Sbjct 26397164 TTGACTACGTCCCTGCCCTTTGTA 26397141 Score = 269 bits (298), Expect = 5e-70 Identities = 218/261 (84%), Gaps = 2/261 (1%) Strand=Plus/Minus Query 67 GCCGGCTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGT 125 ||| | |||||||||||| ||| | | | || | | ||||||||| |||||||| |||| Sbjct 26558342 GCCAGTTTCTTAGAGGGATTATGGCCGCTTAGTCCAAGGAAGTTTGGGGCAATAATAGGT 26558283 Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185 ||||||||||||||||||||||||||||||| ||||||| ||||| | |||||||| Sbjct 26558282 CTGTGATGCCCTTAGATGTTCTGGGCCGCACACGCGCTATACTGATGTATTCAACGAGTC 26558223 Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245 || ||||||||| ||| |||||||||||| | ||| | ||||| ||| |||||| Sbjct 26558222 TATAGCCTTGGCCGACAGGCCTGGGTAATCTT-TGAAATTTCATCGTGATGGAGATAGAT 26558164 Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305 |||||||||| ||| ||||||||||||||| ||||||||| ||| ||||||||| ||||| Sbjct 26558163 CATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGTGCGAGTCATCAGCTCGCGT 26558104 Query 306 TGATTACGTCCCTGCCCTTTG 326 ||| ||||||||||||||||| Sbjct 26558103 TGACTACGTCCCTGCCCTTTG 26558083 >seq17 Length=836409 Score = 300 bits (332), Expect = 3e-79 Identities = 227/264 (86%), Gaps = 4/264 (2%) Strand=Plus/Plus Query 67 GCCGGCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGG 124 ||| |||||||||||||||||| | ||| | ||| | |||||||||||||||||||||| Sbjct 22040 GCCAGCTTCTTAGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAGG 22098 Query 125 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT 184 |||||||||||||||||||||||||||||||||||||||||| ||| | |||||||| Sbjct 22099 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACATTGATGTATTCAACGAGT 22158 Query 185 TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGA 244 || ||||||||| ||| ||||||||| || | ||| | ||||| |||||||||| Sbjct 22159 CTATAGCCTTGGCCGACAGGCCTGGGTAATGTT-TGAAATTTCATCGTGATGGGGATAGA 22217 Query 245 GCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCG 304 |||||||||| ||| ||||||||||||||| |||||||| |||| ||||||||| |||| Sbjct 22218 TCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAACGCGAGTCATCAGCTCGCG 22277 Query 305 TTGATTACGTCCCTGCCCTTTGTA 328 |||| ||||||||||||||||||| Sbjct 22278 TTGACTACGTCCCTGCCCTTTGTA 22301 >seq7 Length=52445601 Score = 284 bits (314), Expect = 2e-74 Identities = 223/263 (85%), Gaps = 4/263 (2%) Strand=Plus/Plus Query 68 CCGGCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 125 || |||||||||||||||||| | ||| ||||| | ||||||||||||||| ||||||| Sbjct 37651772 CCAGCTTCTTAGAGGGACTATGGCCGCTTAAGCCAA-GGAAGTTTGAGGCAACAACAGGT 37651830 Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185 |||||||||||||||||||||||||||||| ||| |||||||||| | |||||||| Sbjct 37651831 CTGTGATGCCCTTAGATGTTCTGGGCCGCATGCGTGCTACACTGATGTATTCAACGAGTC 37651890 Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245 || |||| || | ||| |||||||||||| | ||| | ||||| |||||||||| Sbjct 37651891 TATAGCCTTAGCTGACAGGCCTGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGAT 37651949 Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305 |||||||||| ||| ||||||||||||||| ||||||||| ||| ||||||||| ||||| Sbjct 37651950 CATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGTGCGAGTCATCAGCTCGCGT 37652009 Query 306 TGATTACGTCCCTGCCCTTTGTA 328 ||| ||||||| ||||||||||| Sbjct 37652010 TGACTACGTCCATGCCCTTTGTA 37652032 >seq10 Length=39358841 Score = 206 bits (228), Expect = 5e-51 Identities = 157/184 (85%), Gaps = 1/184 (1%) Strand=Plus/Minus Query 145 TCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGG 204 |||||||||||||||||||||||||| | |||||||| || ||||||||| ||| Sbjct 16384144 TCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGCCTTGGCCGACAGG 16384085 Query 205 TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTT 264 || ||||||||| | ||| | ||||| |||||||||| |||||||||| ||| |||| Sbjct 16384084 CCTAGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCAATTGTTGGTCTT 16384026 Query 265 CAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTT 324 ||||||||||| ||||||||||||| ||||||||| |||||||| ||||||||||||||| Sbjct 16384025 CAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTT 16383966 Query 325 TGTA 328 |||| Sbjct 16383965 TGTA 16383962 >seq9 Length=39018107 Score = 168 bits (186), Expect = 1e-39 Identities = 128/150 (85%), Gaps = 1/150 (1%) Strand=Plus/Plus Query 179 ACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGG 238 |||||| || ||||||||| ||| || ||||||||| | ||| | ||||| |||| Sbjct 33904826 ACGAGTCTATAGCCTTGGCCGACAGGCCTAGGTAATCTT-TGAAATTTCATCGTGATGGG 33904884 Query 239 GATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAG 298 |||||| |||||||||| ||| ||||||||||||||| ||||||||||||| |||||||| Sbjct 33904885 GATAGATCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAG 33904944 Query 299 CACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | |||||||| ||||||||||||||||||| Sbjct 33904945 CTCGCGTTGACTACGTCCCTGCCCTTTGTA 33904974 >seq38 Length=444919 Score = 100 bits (110), Expect = 5e-19 Identities = 88/103 (85%), Gaps = 5/103 (5%) Strand=Plus/Minus Query 228 GTCGTGCTGGGGATAGAGCAT-TGCAATTATTGCTCTTCAACGAGGAA-TGCCTAGTAAG 285 |||||| |||||||||| ||| ||||||| || |||||||||||||| | ||||||||| Sbjct 432769 GTCGTGATGGGGATAGATCATATGCAATTGGTGGTCTTCAACGAGGAATTCCCTAGTAAG 432710 Query 286 CG-CGTGTCATCAGCACGC-GTTGATTACGT-CCCTGCCCTTT 325 || || ||||||| | ||| ||||| ||||| ||||||||||| Sbjct 432709 CGTCGAGTCATCATCTCGCGGTTGACTACGTCCCCTGCCCTTT 432667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947153104128