Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq4951 179 1e-42 seq9 154 5e-35 seq5 109 2e-21 seq10 107 6e-21 seq7 89.7 2e-15 seq3 89.7 2e-15 seq4 82.4 3e-13 seq2 77.0 1e-11 >seq4951 Length=160137 Score = 179 bits (198), Expect = 1e-42 Identities = 397/583 (68%), Gaps = 38/583 (7%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||| | ||| ||| | | |||||||| | |||||||| ||||| Sbjct 110100 CGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATG 110159 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | ||| | || |||||||||||||| ||| |||||||| ||| Sbjct 110160 ACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATC 110219 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || ||||||| ||||| ||||||||||| || | | ||| || |||||||||||| Sbjct 110220 AGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCC 110279 Query 182 CCGAAAACTATTTAGGTAGTGCCTCAAGTATCAC----CATC-GGGGGTAGAGCACTGTT 236 |||||| || ||| || ||| | || |||| |||||| ||||||||| Sbjct 110280 CCGAAATGCGTTGAGGCGCAGC----AGT-TGACTGGACATCTAGGGGTAAAGCACTGTT 110334 Query 237 ATGGCTAGGG-GGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGC--------G 287 || ||| | | ||| ||||||| | |||||||| |||| | Sbjct 110335 TCGGTGCGGGCCGCGAGAGCG--GTACCAAATCGAGGCAAACTCTGAATACTAGATATGA 110392 Query 288 CATC--AGTTTTACCG--------CGG-GAGTGAGGGCATGGGTGCTAAGGTCCGTGCCC 336 | || | | || | ||| |||||| ||||| | |||| | | | | Sbjct 110393 CCTCCAAATAATAGGGGTCAAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCGTC 110452 Query 337 GAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAA 396 |||||| || | ||||| | ||||||||||||| ||||||| ||| ||| | | || Sbjct 110453 GAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--AA 110510 Query 397 CGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGA 456 || || | ||| ||||||| |||| ||| || | |||||||||| | || ||||| Sbjct 110511 GGAGGTAGGGGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTGAAAGA 110569 Query 457 GTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGT 516 |||||||| |||||||| ||||| || ||| || || | |||| |||| | Sbjct 110570 GTGCGTAATAGCTCACTGATCGAGCGCTCTTGCGCCGAAGATGAACGGG-GCTAAGCGAT 110628 Query 517 CTACCGAAGCAGTGGGAT-CATTTATATGATCGGTAGGGGAGC 558 || ||||||| ||||||| | ||| |||||||||||||| Sbjct 110629 CTGCCGAAGCTGTGGGATGTAAAAATA-CATCGGTAGGGGAGC 110670 Score = 179 bits (198), Expect = 1e-42 Identities = 397/583 (68%), Gaps = 38/583 (7%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||| | ||| ||| | | |||||||| | |||||||| ||||| Sbjct 138910 CGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATG 138851 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | ||| | || |||||||||||||| ||| |||||||| ||| Sbjct 138850 ACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATC 138791 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || ||||||| ||||| ||||||||||| || | | ||| || |||||||||||| Sbjct 138790 AGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCC 138731 Query 182 CCGAAAACTATTTAGGTAGTGCCTCAAGTATCAC----CATC-GGGGGTAGAGCACTGTT 236 |||||| || ||| || ||| | || |||| |||||| ||||||||| Sbjct 138730 CCGAAATGCGTTGAGGCGCAGC----AGT-TGACTGGACATCTAGGGGTAAAGCACTGTT 138676 Query 237 ATGGCTAGGG-GGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGC--------G 287 || ||| | | ||| ||||||| | |||||||| |||| | Sbjct 138675 TCGGTGCGGGCCGCGAGAGCG--GTACCAAATCGAGGCAAACTCTGAATACTAGATATGA 138618 Query 288 CATC--AGTTTTACCG--------CGG-GAGTGAGGGCATGGGTGCTAAGGTCCGTGCCC 336 | || | | || | ||| |||||| ||||| | |||| | | | | Sbjct 138617 CCTCCAAATAATAGGGGTCAAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCGTC 138558 Query 337 GAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAA 396 |||||| || | ||||| | ||||||||||||| ||||||| ||| ||| | | || Sbjct 138557 GAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--AA 138500 Query 397 CGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGA 456 || || | ||| ||||||| |||| ||| || | |||||||||| | || ||||| Sbjct 138499 GGAGGTAGGGGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTGAAAGA 138441 Query 457 GTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGT 516 |||||||| |||||||| ||||| || ||| || || | |||| |||| | Sbjct 138440 GTGCGTAATAGCTCACTGATCGAGCGCTCTTGCGCCGAAGATGAACGGG-GCTAAGCGAT 138382 Query 517 CTACCGAAGCAGTGGGAT-CATTTATATGATCGGTAGGGGAGC 558 || ||||||| ||||||| | ||| |||||||||||||| Sbjct 138381 CTGCCGAAGCTGTGGGATGTAAAAATA-CATCGGTAGGGGAGC 138340 >seq9 Length=39018107 Score = 154 bits (170), Expect = 5e-35 Identities = 389/581 (67%), Gaps = 34/581 (6%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||| | ||| ||| | | |||||||| | |||||||| ||||| Sbjct 28484465 CGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATG 28484524 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | ||| | || |||||||||||||| ||| |||||||| ||| Sbjct 28484525 ACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCAACTGATGTTGAAGAATC 28484584 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 | ||||||| ||||| ||||||||||| || | | ||| || |||||||||||| Sbjct 28484585 AACGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCC 28484644 Query 182 CCGAAAACTATTTAGGTAGTGCCTCAAGTA--TCACCATC-GGGGGTAGAGCACTGTTAT 238 || ||| || || | || || || | |||| |||||| ||||||||| Sbjct 28484645 CCAAAATGCGTTGAG---GCGCAGCAGTTAACTGGACATCTAGGGGTAAAGCACTGTTTC 28484701 Query 239 GGCTAGGG-GGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGC---GCATCAGT 294 || ||| | | ||| ||||||| | |||||||| |||| | || | | Sbjct 28484702 GGTGCGGGCCGCGAGAGCG--GTACCAAATCGAGGCAAACTCTGAATACTAGATATGACT 28484759 Query 295 T-----TTACCGCGG-----------GAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGA 338 | | | | || |||||| || || | |||| | | | ||| Sbjct 28484760 TCCAAATAATAGGGGTCAAGGTCGACCAGTGAGACGATAGGGGATAAGCTTCATCGTCGA 28484819 Query 339 GAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACG 398 |||| || | ||||| | ||||||||||||| ||| ||| || ||| | | || | Sbjct 28484820 GAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAAAGACCACTCAGTGATA--AAAG 28484877 Query 399 AAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGT 458 | || | ||| ||||||| |||| ||| || | |||||||||| | || ||||||| Sbjct 28484878 AGGTAGGGGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTGAAAGAGT 28484936 Query 459 GCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCT 518 |||||| ||||||||| ||||| || ||| || || | || | |||| ||| Sbjct 28484937 GCGTAATAGCTCACTAATCGAGCGCTCTTGCGCCGAAGATGAACGAG-GCTAAGCGATCT 28484995 Query 519 ACCGAAGCAGTGGGAT-CATTTATATGATCGGTAGGGGAGC 558 ||||||| ||||||| | ||| ||||||| |||||| Sbjct 28484996 GCCGAAGCTGTGGGATGTAAAAATA-CATCGGTAAGGGAGC 28485035 Score = 77.0 bits (84), Expect = 1e-11 Identities = 109/149 (73%), Gaps = 7/149 (5%) Strand=Plus/Plus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAA--CACGCCCTG 91 |||| ||| | | ||||| || ||||| ||||||||||| |||| || || || | Sbjct 8343799 GACCTGAATCTAGGTGATTTATCCATGACCAGGATGAAGCTTGCGTGAAACCAAGC---G 8343855 Query 92 GAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGG 151 ||||||||||| ||| |||||||| ||| | || || ||| | |||||||| || | Sbjct 8343856 AAGGTCCGAACCAACTGATGTTGAAGAATCAACAAATAAGTTGTAGTTAGGGGTG-AATG 8343914 Query 152 CTAAACAAACTTGGAAATAGCTGGTTCTC 180 | | ||||||| || ||||| ||||| Sbjct 8343915 CCACTCAAACTTAGAGCTAGCTACTTCTC 8343943 >seq5 Length=74729908 Score = 109 bits (120), Expect = 2e-21 Identities = 95/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAG 94 |||||||| |||||||| ||||| ||||||||||| | ||| | || ||||| Sbjct 58273483 GACCCGAACTTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTGGAG 58273542 Query 95 GTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGC 152 ||||||||| ||| |||||||| |||||| ||||||| ||||| ||||||||||| || Sbjct 58273543 GTCCGAACCGACTGATGTTGAAGAATTAGCGGATGAGTTGTGGTTAGGGGTGAAATGC 58273600 Score = 96.9 bits (106), Expect = 1e-17 Identities = 127/174 (73%), Gaps = 3/174 (2%) Strand=Plus/Minus Query 306 AGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTA 365 |||||| ||||| | |||| | | | ||||||| || | ||| | | |||||| Sbjct 2753523 AGTGAGACGATGGGAGATAAGCTTCATCGTCGAGAGGGAAACAGCCCGAATCACCAGCTA 2753464 Query 366 AGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGAT 425 ||||||| ||||||| ||| ||| | | || || || | ||| ||||||| |||| Sbjct 2753463 AGGCCCCTAAATGACCGCTCAGTGATA--AAGGAGGTAGGGGTGCAGAGACAGCCAGGAG 2753406 Query 426 GTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGA 479 ||| || | |||||||||| | || ||||||||||||| |||||||| |||| Sbjct 2753405 GTTTGCCTAGAAGCAGCCA-CCCTTGAAAGAGTGCGTAATAGCTCACTGATCGA 2753353 >seq10 Length=39358841 Score = 107 bits (118), Expect = 6e-21 Identities = 109/141 (77%), Gaps = 1/141 (1%) Strand=Plus/Plus Query 48 GTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACT 107 |||||||| ||||| ||||||||||| | ||| | || || |||||| |||| | | Sbjct 15815354 GTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTGTAGGTCCAAACCGATT 15815413 Query 108 AATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAA 167 |||||||| |||||| ||||||| ||||| || |||||||| || | ||||| | || Sbjct 15815414 GATGTTGAAGAATTAGCGGATGAGTTGTGGTTACGGGTGAAATGCCACTCAAACCTAGAG 15815473 Query 168 ATAGCTGGTTCTCTCCGAAAA 188 |||||| ||||| || |||| Sbjct 15815474 CTAGCTGATTCTC-CCTAAAA 15815493 Score = 89.7 bits (98), Expect = 2e-15 Identities = 95/123 (77%), Gaps = 3/123 (2%) Strand=Plus/Plus Query 351 CCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGC 410 ||||| | ||||||||||||| ||||||| ||| ||| | | || || || | ||| Sbjct 34324873 CCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--AAGGAGGTAGGGGTGC 34324930 Query 411 TAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTC 470 ||||||| |||| ||| || | |||||||||| | || ||||||||||||| ||||| Sbjct 34324931 AGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTGAAAGAGTGCGTAATAGCTC 34324989 Query 471 ACT 473 ||| Sbjct 34324990 ACT 34324992 >seq7 Length=52445601 Score = 89.7 bits (98), Expect = 2e-15 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 90 TGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAA 149 ||||||||||||| ||||||||||||||| || ||||||| ||||| || |||||||| Sbjct 18025199 TGGAGGTCCGAACTGGCTAATGTTGAAAAATCAGCGGATGAGTTGTGGTTAAGGGTGAAA 18025140 Query 150 GGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGT 198 || | ||||| || || || |||||| |||||| | || |||| Sbjct 18025139 TGCCACTCAAACCCAGAGTTAACTAGTTCTCCCCGAAATGTGTTGAGGT 18025091 >seq3 Length=80079441 Score = 89.7 bits (98), Expect = 2e-15 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 66 GGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGG 125 |||||||| | ||| | || |||||||||||||| ||| |||||||| ||| || | Sbjct 56887864 GGATGAAGCTTTGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATCAGCG 56887923 Query 126 GATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGA 185 ||||| ||||| ||||||||||| || | | ||| || |||||||||||| | || Sbjct 56887924 AATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCCCTGA 56887983 Query 186 AA 187 || Sbjct 56887984 AA 56887985 Score = 78.8 bits (86), Expect = 3e-12 Identities = 114/159 (72%), Gaps = 3/159 (2%) Strand=Plus/Minus Query 315 ATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGA 374 ||||| | |||| | | | |||| || || | ||||| | || ||||||||| | Sbjct 56890215 ATGGGGGATAAGCTTCATCATCGAGGGGGAAACAGCCCGGATCACCAACTAAGGCCCAAA 56890156 Query 375 AATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTG 434 |||||| ||| ||| | | || || || | ||| ||||| | |||| ||| || | Sbjct 56890155 AATGACCGCTCAGTGATA--AATGAGGTTGGGGTGCAGAGACAACCAGGAGGTTTGCCTA 56890098 Query 435 GAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACT 473 |||||||||| | || ||||||||||||| |||||||| Sbjct 56890097 GAAGCAGCCACCC-TTGAAAGAGTGCGTAATAGCTCACT 56890060 >seq4 Length=41978195 Score = 82.4 bits (90), Expect = 3e-13 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 48 GTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACT 107 |||||||| ||||| | ||||| ||| | ||| | || |||| ||| ||||| || Sbjct 34289917 GTGATCTATCCATGACTAGGATAAAGCTTGGGTGAAACTAAGTGGAAGTCTGAACCGCCT 34289976 Query 108 AATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAA 167 || || |||||||| |||||| |||| ||||||||||| |||| ||||| || Sbjct 34289977 GATATTAAAAAATTAATAGATGAGTTGTGATTAGGGGTGAAATGCTACTCAAACCCAGAG 34290036 Query 168 ATAGCTGGTTCTCTCCGAAA 187 || ||||||||| | ||| Sbjct 34290037 CTAATTGGTTCTCTTCAAAA 34290056 >seq2 Length=64235786 Score = 77.0 bits (84), Expect = 1e-11 Identities = 120/168 (71%), Gaps = 8/168 (5%) Strand=Plus/Plus Query 315 ATGGGTGCTAAGGTC--CGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCC 372 ||||| | |||| || ||| ||| ||| || || |||| | ||||||||||||| Sbjct 6694174 ATGGGGGATAAGTTCATCGT---CGAAAGGGAAACAACTCGGATCACCAGCTAAGGCCCC 6694230 Query 373 GAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCT 432 ||||||| ||| | | | | || || || | || ||||||| | || ||| || Sbjct 6694231 TAAATGACCGCTCAATGATA--AAAGAGGTAGGGGTGTAGAGACAGCCAAGAGGTTTGCC 6694288 Query 433 TGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 | |||||||||| | || ||||||||| ||| |||||||| ||||| Sbjct 6694289 TAGAAGCAGCCA-CCCTTGAAAGAGTGCATAATAGCTCACTGATCGAG 6694335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689516347904