Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq4951 132 9e-29 seq9 111 3e-22 seq10 93.3 8e-17 seq5 89.7 9e-16 seq3 77.0 6e-12 >seq4951 Length=160137 Score = 132 bits (146), Expect = 9e-29 Identities = 178/243 (73%), Gaps = 11/243 (5%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| |||| Sbjct 109472 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 109531 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| |||||| || |||| ||| | Sbjct 109532 GAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCGAA 109584 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| ||| Sbjct 109585 C--TGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 109641 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 109642 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 109701 Query 249 CCT 251 ||| Sbjct 109702 CCT 109704 Score = 132 bits (146), Expect = 9e-29 Identities = 178/243 (73%), Gaps = 11/243 (5%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| |||| Sbjct 139538 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 139479 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| |||||| || |||| ||| | Sbjct 139478 GAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCGAA 139426 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| ||| Sbjct 139425 C--TGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 139369 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 139368 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 139309 Query 249 CCT 251 ||| Sbjct 139308 CCT 139306 >seq9 Length=39018107 Score = 111 bits (122), Expect = 3e-22 Identities = 173/243 (71%), Gaps = 11/243 (5%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || || ||||| ||||||| ||| | ||| | || Sbjct 28483837 GGTGGATACCTAGGCACCCAGAGATGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCAGG 28483896 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| |||||| || |||| ||| | Sbjct 28483897 GAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCGAA 28483949 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| || | |||| || ||| || ||| |||||||||| ||| Sbjct 28483950 C--TGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGTGAATTGAAACATCTTAGT 28484006 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 |||| |||||| |||| ||| | ||||||| ||||| || ||||||||||||| || Sbjct 28484007 AGCTAGAGGAAATGAAAGCAAAAGCGATTCCCGTAGTAGCGGTGAGCGAAATGGGAGCAG 28484066 Query 249 CCT 251 ||| Sbjct 28484067 CCT 28484069 >seq10 Length=39358841 Score = 93.3 bits (102), Expect = 8e-17 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 168 GGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAG 227 |||||| |||||||||| ||||||| ||||||||||| ||| | |||||||| ||||| Sbjct 15813840 GGCGAATTGAAACATCTTAGTAGCTAGAGGAAAAGAAAGCAAAAGTGATTCCCATAGTAG 15813899 Query 228 TGGCGAGCGAAATGGGATGAGCCT 251 |||||| ||||||||| ||||| Sbjct 15813900 CGGCGAGTGAAATGGGAGCAGCCT 15813923 >seq5 Length=74729908 Score = 89.7 bits (98), Expect = 9e-16 Identities = 120/164 (73%), Gaps = 10/164 (6%) Strand=Plus/Plus Query 89 GATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGTCATTGCATGCTGAATACAT 148 |||||| |||||||||||| || ||| ||| | | ||| |||||||| ||| Sbjct 4698319 GATCCGGAGATTTCCGAATAGGTCAACA------TTTCGAAC--TGC-TGCTGAATCCAT 4698369 Query 149 AGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATC 207 || | |||| || ||| |||||||||||||||| |||||| ||||||| ||| | Sbjct 4698370 GGGCAGGCAAGAGACAACCTAGCGAACTGAAACATCTTAGTAGCCAAAGGAAAAAAAAGC 4698429 Query 208 AACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 || | ||||||| | ||| || |||| |||||||| ||||| Sbjct 4698430 AAAAGCGATTCCCGTAATAGCGGTGAGCAAAATGGGAGTAGCCT 4698473 Score = 75.2 bits (82), Expect = 2e-11 Identities = 72/91 (79%), Gaps = 1/91 (1%) Strand=Plus/Plus Query 137 TGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCA 195 |||||||| ||| || | |||| || ||| ||||||||||||||||| |||||| | Sbjct 43007279 TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGCCAGA 43007338 Query 196 GGAAAAGAAATCAACCGAGATTCCCAAAGTA 226 |||||||||| ||| | ||||||| |||| Sbjct 43007339 GGAAAAGAAAGCAAAAGCGATTCCCGTAGTA 43007369 >seq3 Length=80079441 Score = 77.0 bits (84), Expect = 6e-12 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| ||||||| ||||| |||||||||||||| | | ||||| Sbjct 50079487 GCGAACTGAAACATCTGAGTAGCTAAAGGAAGGGAAATCAACCGAGACTACGTTAGTAGC 50079546 Query 229 GGCGAGCGAAATGGGAT 245 ||||||||| | |||| Sbjct 50079547 GGCGAGCGAGAGCGGAT 50079563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918354530016