Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02]
4,951 sequences; 691,429,809 total letters
Query= AAMG01002194.1
Length=319
Score E
Sequences producing significant alignments: (Bits) Value
seq4951 132 9e-29
seq9 111 3e-22
seq10 93.3 8e-17
seq5 89.7 9e-16
seq3 77.0 6e-12
>seq4951
Length=160137
Score = 132 bits (146), Expect = 9e-29
Identities = 178/243 (73%), Gaps = 11/243 (5%)
Strand=Plus/Plus
Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69
||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| ||||
Sbjct 109472 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 109531
Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129
|||| | ||| | | | |||||| ||||| |||||| || |||| ||| |
Sbjct 109532 GAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCGAA 109584
Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188
| ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| |||
Sbjct 109585 C--TGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 109641
Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248
||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| ||
Sbjct 109642 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 109701
Query 249 CCT 251
|||
Sbjct 109702 CCT 109704
Score = 132 bits (146), Expect = 9e-29
Identities = 178/243 (73%), Gaps = 11/243 (5%)
Strand=Plus/Minus
Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69
||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| ||||
Sbjct 139538 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 139479
Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129
|||| | ||| | | | |||||| ||||| |||||| || |||| ||| |
Sbjct 139478 GAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCGAA 139426
Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188
| ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| |||
Sbjct 139425 C--TGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 139369
Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248
||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| ||
Sbjct 139368 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 139309
Query 249 CCT 251
|||
Sbjct 139308 CCT 139306
>seq9
Length=39018107
Score = 111 bits (122), Expect = 3e-22
Identities = 173/243 (71%), Gaps = 11/243 (5%)
Strand=Plus/Plus
Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69
||||||| ||| ||| | || || ||||| ||||||| ||| | ||| | ||
Sbjct 28483837 GGTGGATACCTAGGCACCCAGAGATGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCAGG 28483896
Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129
|||| | ||| | | | |||||| ||||| |||||| || |||| ||| |
Sbjct 28483897 GAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCGAA 28483949
Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188
| ||| |||||||| ||| || | |||| || ||| || ||| |||||||||| |||
Sbjct 28483950 C--TGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGTGAATTGAAACATCTTAGT 28484006
Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248
|||| |||||| |||| ||| | ||||||| ||||| || ||||||||||||| ||
Sbjct 28484007 AGCTAGAGGAAATGAAAGCAAAAGCGATTCCCGTAGTAGCGGTGAGCGAAATGGGAGCAG 28484066
Query 249 CCT 251
|||
Sbjct 28484067 CCT 28484069
>seq10
Length=39358841
Score = 93.3 bits (102), Expect = 8e-17
Identities = 71/84 (85%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 168 GGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAG 227
|||||| |||||||||| ||||||| ||||||||||| ||| | |||||||| |||||
Sbjct 15813840 GGCGAATTGAAACATCTTAGTAGCTAGAGGAAAAGAAAGCAAAAGTGATTCCCATAGTAG 15813899
Query 228 TGGCGAGCGAAATGGGATGAGCCT 251
|||||| ||||||||| |||||
Sbjct 15813900 CGGCGAGTGAAATGGGAGCAGCCT 15813923
>seq5
Length=74729908
Score = 89.7 bits (98), Expect = 9e-16
Identities = 120/164 (73%), Gaps = 10/164 (6%)
Strand=Plus/Plus
Query 89 GATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGTCATTGCATGCTGAATACAT 148
|||||| |||||||||||| || ||| ||| | | ||| |||||||| |||
Sbjct 4698319 GATCCGGAGATTTCCGAATAGGTCAACA------TTTCGAAC--TGC-TGCTGAATCCAT 4698369
Query 149 AGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATC 207
|| | |||| || ||| |||||||||||||||| |||||| ||||||| ||| |
Sbjct 4698370 GGGCAGGCAAGAGACAACCTAGCGAACTGAAACATCTTAGTAGCCAAAGGAAAAAAAAGC 4698429
Query 208 AACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251
|| | ||||||| | ||| || |||| |||||||| |||||
Sbjct 4698430 AAAAGCGATTCCCGTAATAGCGGTGAGCAAAATGGGAGTAGCCT 4698473
Score = 75.2 bits (82), Expect = 2e-11
Identities = 72/91 (79%), Gaps = 1/91 (1%)
Strand=Plus/Plus
Query 137 TGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCA 195
|||||||| ||| || | |||| || ||| ||||||||||||||||| |||||| |
Sbjct 43007279 TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGCCAGA 43007338
Query 196 GGAAAAGAAATCAACCGAGATTCCCAAAGTA 226
|||||||||| ||| | ||||||| ||||
Sbjct 43007339 GGAAAAGAAAGCAAAAGCGATTCCCGTAGTA 43007369
>seq3
Length=80079441
Score = 77.0 bits (84), Expect = 6e-12
Identities = 63/77 (82%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228
|||||||||||||||| ||||||| ||||| |||||||||||||| | | |||||
Sbjct 50079487 GCGAACTGAAACATCTGAGTAGCTAAAGGAAGGGAAATCAACCGAGACTACGTTAGTAGC 50079546
Query 229 GGCGAGCGAAATGGGAT 245
||||||||| | ||||
Sbjct 50079547 GGCGAGCGAGAGCGGAT 50079563
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 918354530016
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |