Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02]
4,951 sequences; 691,429,809 total letters
Query= AAMG01002207.1
Length=564
Score E
Sequences producing significant alignments: (Bits) Value
seq4951 183 1e-43
seq9 127 7e-27
seq5 107 7e-21
seq11 84.2 7e-14
seq3 84.2 7e-14
seq8 82.4 3e-13
seq153 77.0 1e-11
seq10 75.2 4e-11
seq1 75.2 4e-11
>seq4951
Length=160137
Score = 183 bits (202), Expect = 1e-43
Identities = 390/570 (68%), Gaps = 23/570 (4%)
Strand=Plus/Minus
Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60
||||| || |||| |||||||||||||||| ||| || ||||| | || ||
Sbjct 111837 TCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCC 111778
Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120
|| | | |||| |||||||| |||||||||||| |||||||||| | || ||||||
Sbjct 111777 GTCCGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTAC-GCCCCAT 111719
Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATATC 177
||||| | ||| | |||||||| || || || || |||||||||| ||
Sbjct 111718 AGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGTAGGTCCTGACACAAGGTTAGAATTC 111659
Query 178 CACTACGGTCAGAGTGGTATTTCAACAACGACTC---CACAACCACTAGCGTGGCCGCAT 234
| | ||||||||||| ||| | | ||| | | || || | |||| |
Sbjct 111658 TAGCTCTTCCAGAGTGGTATCTCACTGATGGCTCGGGCCCCCCCGGAAG-GAGGCCT--T 111602
Query 235 CATAGTCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAGTG 292
| | | || ||||||| || | || || || | || |||||| ||| | | |||
Sbjct 111601 CTTCGCCTTCCACCTAAGCTGCGCAGGAAAGGCCC--AAAGCCAATCCCAGGGAACAGTA 111544
Query 293 AAGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAA 351
||| | | |||||||| |||| | || | | ||||||| || | | |
Sbjct 111543 AAGCTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTA 111484
Query 352 TTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGG 410
|||||||| | | | ||||||| | || |||||||||| ||||||| ||||||
Sbjct 111483 TTTCACCGAGTTTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTCGG 111425
Query 411 AACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTAC 470
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 111424 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCAC 111365
Query 471 TGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTT 530
|||||||| | ||| ||| || || | | |||| | ||| |||||
Sbjct 111364 CGGGGCTTC-GGTCGCCGGCTC-----CCCTGTCATCAGGTCACCAACTTCCTTGACCTT 111311
Query 531 CCAGCACCGGGCAGGCGTCAGTCCGTATAC 560
|| |||| ||||||||||||| || ||||
Sbjct 111310 CCGGCACTGGGCAGGCGTCAGCCCCCATAC 111281
Score = 183 bits (202), Expect = 1e-43
Identities = 390/570 (68%), Gaps = 23/570 (4%)
Strand=Plus/Plus
Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60
||||| || |||| |||||||||||||||| ||| || ||||| | || ||
Sbjct 137173 TCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCC 137232
Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120
|| | | |||| |||||||| |||||||||||| |||||||||| | || ||||||
Sbjct 137233 GTCCGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTAC-GCCCCAT 137291
Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATATC 177
||||| | ||| | |||||||| || || || || |||||||||| ||
Sbjct 137292 AGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGTAGGTCCTGACACAAGGTTAGAATTC 137351
Query 178 CACTACGGTCAGAGTGGTATTTCAACAACGACTC---CACAACCACTAGCGTGGCCGCAT 234
| | ||||||||||| ||| | | ||| | | || || | |||| |
Sbjct 137352 TAGCTCTTCCAGAGTGGTATCTCACTGATGGCTCGGGCCCCCCCGGAAG-GAGGCCT--T 137408
Query 235 CATAGTCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAGTG 292
| | | || ||||||| || | || || || | || |||||| ||| | | |||
Sbjct 137409 CTTCGCCTTCCACCTAAGCTGCGCAGGAAAGGCCC--AAAGCCAATCCCAGGGAACAGTA 137466
Query 293 AAGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAA 351
||| | | |||||||| |||| | || | | ||||||| || | | |
Sbjct 137467 AAGCTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTA 137526
Query 352 TTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGG 410
|||||||| | | | ||||||| | || |||||||||| ||||||| ||||||
Sbjct 137527 TTTCACCGAGTTTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTCGG 137585
Query 411 AACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTAC 470
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 137586 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCAC 137645
Query 471 TGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTT 530
|||||||| | ||| ||| || || | | |||| | ||| |||||
Sbjct 137646 CGGGGCTTC-GGTCGCCGGCTC-----CCCTGTCATCAGGTCACCAACTTCCTTGACCTT 137699
Query 531 CCAGCACCGGGCAGGCGTCAGTCCGTATAC 560
|| |||| ||||||||||||| || ||||
Sbjct 137700 CCGGCACTGGGCAGGCGTCAGCCCCCATAC 137729
>seq9
Length=39018107
Score = 127 bits (140), Expect = 7e-27
Identities = 91/105 (87%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 379 AGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 438
|| ||| |||||||||| ||| ||| |||| ||||||||| |||||||||||||||||||
Sbjct 28431895 AGTGGAATCGTTACGCCTTTCATGCGGGTCAGAACTTACCTGACAAGGAATTTCGCTACC 28431836
Query 439 TTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATT 483
|| |||| ||| ||||||| |||||||| ||| |||||||||||
Sbjct 28431835 TTTGGATCGTTCTAGTTACGGCCGCCGTTCACTCGGGCTTCAATT 28431791
Score = 109 bits (120), Expect = 2e-21
Identities = 116/153 (76%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 331 GCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTT 390
||||||| || | | ||||||||| ||| | || | || || ||||| |||||||
Sbjct 15382300 GCATCTTCACAAAGAATTCAATTTCACTGGGTTTATGTTGAAGGCAACAGGGCAGTCGTT 15382359
Query 391 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTA 450
|| ||||| ||||||||| ||||| ||| |||||||||||||||||||||| ||||
Sbjct 15382360 ACACCATTTGTGCAGGTCACTACTTATATGACCAGGAATTTCGCTACCTTAGGATAGTTA 15382419
Query 451 TAGTTACCACCGCCGTTTACTGGGGCTTCAATT 483
|||||| || | ||||| |||||| |||
Sbjct 15382420 AAGTTACTGCCACTGTTTATGTTGGCTTCCATT 15382452
Score = 93.3 bits (102), Expect = 1e-16
Identities = 77/94 (82%), Gaps = 0/94 (0%)
Strand=Plus/Minus
Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445
||||||| || |||||||||||||||||||| ||||||||||||| ||| ||||||
Sbjct 8345112 TCGTTACACCTTTCGTGCAGGTCGGAACTTATATGACAAGGAATTTCACTAATTTAGGAC 8345053
Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479
|||||||||| | || || |||||||||||
Sbjct 8345052 TGTTATAGTTATGATTGCTATTCACTGGGGCTTC 8345019
>seq5
Length=74729908
Score = 107 bits (118), Expect = 7e-21
Identities = 133/179 (74%), Gaps = 10/179 (6%)
Strand=Plus/Minus
Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445
|||||| ||| ||| |||| |||||||||||||| || ||||||||| |||||||| ||
Sbjct 13676113 TCGTTATGCCTTTCATGCAAGTCGGAACTTACCCTACTAGGAATTTCACTACCTTAAGAC 13676054
Query 446 GGTTATAGTTA----CCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCACACACCAC 501
|||||| ||| | |||||||| ||| ||||||| || || || || | ||
Sbjct 13676053 CGTTATAATTATGGCCGCCCGCCGTTCACTAGGGCTTCGAT----CG-CTAACTCTCC-T 13676000
Query 502 GTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATAC 560
| | | |||| | ||||||||||||||||| ||||| |||||| ||| ||||
Sbjct 13675999 ATCATTAGGTCACCAACTTTCTTAACCTTCCAGCACTGGGCAAGCGTCAATCCCCATAC 13675941
>seq11
Length=45509462
Score = 84.2 bits (92), Expect = 7e-14
Identities = 142/204 (70%), Gaps = 4/204 (2%)
Strand=Plus/Plus
Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60
||||| || |||| |||||||||||||||| | | || ||||| | || ||
Sbjct 6068910 TCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTACCTTTGCACTCGAGGGCCAATCTCC 6068969
Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120
|| | | |||| |||||||| |||||||||||| |||||||||| | | |||||||
Sbjct 6068970 GTCCGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTA-CGCCCCAT 6069028
Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATATC 177
||||| | ||| | |||||||| || || || || |||||||||| ||
Sbjct 6069029 AGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGTAGGTCCTGACACAAGGTTAGAATTC 6069088
Query 178 CACTACGGTCAGAGTGGTATTTCA 201
| | ||||||||||| |||
Sbjct 6069089 TAGCTCTTCCAGAGTGGTATCTCA 6069112
>seq3
Length=80079441
Score = 84.2 bits (92), Expect = 7e-14
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 395 CATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGT 454
|| |||||| ||||| | ||| ||||||||||||||| |||||||||| |||| |||
Sbjct 19561312 CACTCGTGCGGGTCGCTAATTATGCGACAAGGAATTTCGATACCTTAGGACAGTTAGAGT 19561253
Query 455 TACCACCGCCGTTTACTGGGGCTTCAATT 483
||| |||| ||||| |||||||| |||
Sbjct 19561252 TACTGTCGCCATTTACCGGGGCTTCCATT 19561224
>seq8
Length=74329289
Score = 82.4 bits (90), Expect = 3e-13
Identities = 100/135 (74%), Gaps = 1/135 (1%)
Strand=Plus/Minus
Query 12 GTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCCAACCAGGCTGA 71
|||| |||||||||||||||| ||| || ||||| | || || || | | ||
Sbjct 28729303 GTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCCGTCCGGCCCGA 28729244
Query 72 GGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCC 131
|| |||||||| |||||||||||| |||||||||| | | ||||||| ||||| |
Sbjct 28729243 GGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTA-CGCCCCATAGAAACTGTCT 28729185
Query 132 ACCAGGCACTGTCCC 146
||| | ||||||||
Sbjct 28729184 ACCTGAGACTGTCCC 28729170
>seq153
Length=185566
Score = 77.0 bits (84), Expect = 1e-11
Identities = 59/70 (84%), Gaps = 0/70 (0%)
Strand=Plus/Minus
Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445
|||||||||| ||||||| || |||||||||| ||||||||||||| ||||| || ||
Sbjct 145381 TCGTTACGCCTTTCGTGCCAGTTGGAACTTACCTGACAAGGAATTTCACTACCATAAGAC 145322
Query 446 GGTTATAGTT 455
| |||||||
Sbjct 145321 CGGTATAGTT 145312
>seq10
Length=39358841
Score = 75.2 bits (82), Expect = 4e-11
Identities = 71/91 (78%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 388 GTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGG 447
||| |||| ||| || ||||||||||||| | ||||| ||||| ||||||||| |
Sbjct 19346332 GTTTCGCCTTTCATGAGGGTCGGAACTTACTCAACAAGAAATTTTCCTACCTTAGAACCA 19346391
Query 448 TTATAGTTACCACCGCCGTTTACTGGGGCTT 478
|||||||||| |||||||| || || |||
Sbjct 19346392 TTATAGTTACAGCCGCCGTTCACCTGGACTT 19346422
>seq1
Length=40297282
Score = 75.2 bits (82), Expect = 4e-11
Identities = 65/81 (80%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 406 GTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCG 465
|||||||||||| | |||||||||| |||| |||||||| |||||||||| || |||
Sbjct 34840446 GTCGGAACTTACTCAACAAGGAATTATGCTATCTTAGGATCGTTATAGTTATGGCCACCG 34840505
Query 466 TTTACTGGGGCTTCAATTACC 486
|| ||| | | ||| |||||
Sbjct 34840506 TTCACTAGCGTTTCGGTTACC 34840526
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1702315714176
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |