Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq4951 183 1e-43 seq9 127 7e-27 seq5 107 7e-21 seq11 84.2 7e-14 seq3 84.2 7e-14 seq8 82.4 3e-13 seq153 77.0 1e-11 seq10 75.2 4e-11 seq1 75.2 4e-11 >seq4951 Length=160137 Score = 183 bits (202), Expect = 1e-43 Identities = 390/570 (68%), Gaps = 23/570 (4%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| || |||| |||||||||||||||| ||| || ||||| | || || Sbjct 111837 TCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCC 111778 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 || | | |||| |||||||| |||||||||||| |||||||||| | || |||||| Sbjct 111777 GTCCGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTAC-GCCCCAT 111719 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATATC 177 ||||| | ||| | |||||||| || || || || |||||||||| || Sbjct 111718 AGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGTAGGTCCTGACACAAGGTTAGAATTC 111659 Query 178 CACTACGGTCAGAGTGGTATTTCAACAACGACTC---CACAACCACTAGCGTGGCCGCAT 234 | | ||||||||||| ||| | | ||| | | || || | |||| | Sbjct 111658 TAGCTCTTCCAGAGTGGTATCTCACTGATGGCTCGGGCCCCCCCGGAAG-GAGGCCT--T 111602 Query 235 CATAGTCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAGTG 292 | | | || ||||||| || | || || || | || |||||| ||| | | ||| Sbjct 111601 CTTCGCCTTCCACCTAAGCTGCGCAGGAAAGGCCC--AAAGCCAATCCCAGGGAACAGTA 111544 Query 293 AAGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAA 351 ||| | | |||||||| |||| | || | | ||||||| || | | | Sbjct 111543 AAGCTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTA 111484 Query 352 TTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGG 410 |||||||| | | | ||||||| | || |||||||||| ||||||| |||||| Sbjct 111483 TTTCACCGAGTTTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTCGG 111425 Query 411 AACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTAC 470 |||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || Sbjct 111424 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCAC 111365 Query 471 TGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTT 530 |||||||| | ||| ||| || || | | |||| | ||| ||||| Sbjct 111364 CGGGGCTTC-GGTCGCCGGCTC-----CCCTGTCATCAGGTCACCAACTTCCTTGACCTT 111311 Query 531 CCAGCACCGGGCAGGCGTCAGTCCGTATAC 560 || |||| ||||||||||||| || |||| Sbjct 111310 CCGGCACTGGGCAGGCGTCAGCCCCCATAC 111281 Score = 183 bits (202), Expect = 1e-43 Identities = 390/570 (68%), Gaps = 23/570 (4%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| || |||| |||||||||||||||| ||| || ||||| | || || Sbjct 137173 TCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCC 137232 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 || | | |||| |||||||| |||||||||||| |||||||||| | || |||||| Sbjct 137233 GTCCGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTAC-GCCCCAT 137291 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATATC 177 ||||| | ||| | |||||||| || || || || |||||||||| || Sbjct 137292 AGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGTAGGTCCTGACACAAGGTTAGAATTC 137351 Query 178 CACTACGGTCAGAGTGGTATTTCAACAACGACTC---CACAACCACTAGCGTGGCCGCAT 234 | | ||||||||||| ||| | | ||| | | || || | |||| | Sbjct 137352 TAGCTCTTCCAGAGTGGTATCTCACTGATGGCTCGGGCCCCCCCGGAAG-GAGGCCT--T 137408 Query 235 CATAGTCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAGTG 292 | | | || ||||||| || | || || || | || |||||| ||| | | ||| Sbjct 137409 CTTCGCCTTCCACCTAAGCTGCGCAGGAAAGGCCC--AAAGCCAATCCCAGGGAACAGTA 137466 Query 293 AAGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAA 351 ||| | | |||||||| |||| | || | | ||||||| || | | | Sbjct 137467 AAGCTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTA 137526 Query 352 TTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGG 410 |||||||| | | | ||||||| | || |||||||||| ||||||| |||||| Sbjct 137527 TTTCACCGAGTTTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTCGG 137585 Query 411 AACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTAC 470 |||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || Sbjct 137586 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCAC 137645 Query 471 TGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTT 530 |||||||| | ||| ||| || || | | |||| | ||| ||||| Sbjct 137646 CGGGGCTTC-GGTCGCCGGCTC-----CCCTGTCATCAGGTCACCAACTTCCTTGACCTT 137699 Query 531 CCAGCACCGGGCAGGCGTCAGTCCGTATAC 560 || |||| ||||||||||||| || |||| Sbjct 137700 CCGGCACTGGGCAGGCGTCAGCCCCCATAC 137729 >seq9 Length=39018107 Score = 127 bits (140), Expect = 7e-27 Identities = 91/105 (87%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 379 AGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 438 || ||| |||||||||| ||| ||| |||| ||||||||| ||||||||||||||||||| Sbjct 28431895 AGTGGAATCGTTACGCCTTTCATGCGGGTCAGAACTTACCTGACAAGGAATTTCGCTACC 28431836 Query 439 TTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATT 483 || |||| ||| ||||||| |||||||| ||| ||||||||||| Sbjct 28431835 TTTGGATCGTTCTAGTTACGGCCGCCGTTCACTCGGGCTTCAATT 28431791 Score = 109 bits (120), Expect = 2e-21 Identities = 116/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 331 GCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTT 390 ||||||| || | | ||||||||| ||| | || | || || ||||| ||||||| Sbjct 15382300 GCATCTTCACAAAGAATTCAATTTCACTGGGTTTATGTTGAAGGCAACAGGGCAGTCGTT 15382359 Query 391 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTA 450 || ||||| ||||||||| ||||| ||| |||||||||||||||||||||| |||| Sbjct 15382360 ACACCATTTGTGCAGGTCACTACTTATATGACCAGGAATTTCGCTACCTTAGGATAGTTA 15382419 Query 451 TAGTTACCACCGCCGTTTACTGGGGCTTCAATT 483 |||||| || | ||||| |||||| ||| Sbjct 15382420 AAGTTACTGCCACTGTTTATGTTGGCTTCCATT 15382452 Score = 93.3 bits (102), Expect = 1e-16 Identities = 77/94 (82%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 ||||||| || |||||||||||||||||||| ||||||||||||| ||| |||||| Sbjct 8345112 TCGTTACACCTTTCGTGCAGGTCGGAACTTATATGACAAGGAATTTCACTAATTTAGGAC 8345053 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 |||||||||| | || || ||||||||||| Sbjct 8345052 TGTTATAGTTATGATTGCTATTCACTGGGGCTTC 8345019 >seq5 Length=74729908 Score = 107 bits (118), Expect = 7e-21 Identities = 133/179 (74%), Gaps = 10/179 (6%) Strand=Plus/Minus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||| ||| ||| |||| |||||||||||||| || ||||||||| |||||||| || Sbjct 13676113 TCGTTATGCCTTTCATGCAAGTCGGAACTTACCCTACTAGGAATTTCACTACCTTAAGAC 13676054 Query 446 GGTTATAGTTA----CCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCACACACCAC 501 |||||| ||| | |||||||| ||| ||||||| || || || || | || Sbjct 13676053 CGTTATAATTATGGCCGCCCGCCGTTCACTAGGGCTTCGAT----CG-CTAACTCTCC-T 13676000 Query 502 GTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATAC 560 | | | |||| | ||||||||||||||||| ||||| |||||| ||| |||| Sbjct 13675999 ATCATTAGGTCACCAACTTTCTTAACCTTCCAGCACTGGGCAAGCGTCAATCCCCATAC 13675941 >seq11 Length=45509462 Score = 84.2 bits (92), Expect = 7e-14 Identities = 142/204 (70%), Gaps = 4/204 (2%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| || |||| |||||||||||||||| | | || ||||| | || || Sbjct 6068910 TCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTACCTTTGCACTCGAGGGCCAATCTCC 6068969 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 || | | |||| |||||||| |||||||||||| |||||||||| | | ||||||| Sbjct 6068970 GTCCGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTA-CGCCCCAT 6069028 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATATC 177 ||||| | ||| | |||||||| || || || || |||||||||| || Sbjct 6069029 AGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGTAGGTCCTGACACAAGGTTAGAATTC 6069088 Query 178 CACTACGGTCAGAGTGGTATTTCA 201 | | ||||||||||| ||| Sbjct 6069089 TAGCTCTTCCAGAGTGGTATCTCA 6069112 >seq3 Length=80079441 Score = 84.2 bits (92), Expect = 7e-14 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 395 CATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGT 454 || |||||| ||||| | ||| ||||||||||||||| |||||||||| |||| ||| Sbjct 19561312 CACTCGTGCGGGTCGCTAATTATGCGACAAGGAATTTCGATACCTTAGGACAGTTAGAGT 19561253 Query 455 TACCACCGCCGTTTACTGGGGCTTCAATT 483 ||| |||| ||||| |||||||| ||| Sbjct 19561252 TACTGTCGCCATTTACCGGGGCTTCCATT 19561224 >seq8 Length=74329289 Score = 82.4 bits (90), Expect = 3e-13 Identities = 100/135 (74%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 12 GTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCCAACCAGGCTGA 71 |||| |||||||||||||||| ||| || ||||| | || || || | | || Sbjct 28729303 GTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCCGTCCGGCCCGA 28729244 Query 72 GGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCC 131 || |||||||| |||||||||||| |||||||||| | | ||||||| ||||| | Sbjct 28729243 GGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTA-CGCCCCATAGAAACTGTCT 28729185 Query 132 ACCAGGCACTGTCCC 146 ||| | |||||||| Sbjct 28729184 ACCTGAGACTGTCCC 28729170 >seq153 Length=185566 Score = 77.0 bits (84), Expect = 1e-11 Identities = 59/70 (84%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||||||| ||||||| || |||||||||| ||||||||||||| ||||| || || Sbjct 145381 TCGTTACGCCTTTCGTGCCAGTTGGAACTTACCTGACAAGGAATTTCACTACCATAAGAC 145322 Query 446 GGTTATAGTT 455 | ||||||| Sbjct 145321 CGGTATAGTT 145312 >seq10 Length=39358841 Score = 75.2 bits (82), Expect = 4e-11 Identities = 71/91 (78%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 388 GTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGG 447 ||| |||| ||| || ||||||||||||| | ||||| ||||| ||||||||| | Sbjct 19346332 GTTTCGCCTTTCATGAGGGTCGGAACTTACTCAACAAGAAATTTTCCTACCTTAGAACCA 19346391 Query 448 TTATAGTTACCACCGCCGTTTACTGGGGCTT 478 |||||||||| |||||||| || || ||| Sbjct 19346392 TTATAGTTACAGCCGCCGTTCACCTGGACTT 19346422 >seq1 Length=40297282 Score = 75.2 bits (82), Expect = 4e-11 Identities = 65/81 (80%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 406 GTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCG 465 |||||||||||| | |||||||||| |||| |||||||| |||||||||| || ||| Sbjct 34840446 GTCGGAACTTACTCAACAAGGAATTATGCTATCTTAGGATCGTTATAGTTATGGCCACCG 34840505 Query 466 TTTACTGGGGCTTCAATTACC 486 || ||| | | ||| ||||| Sbjct 34840506 TTCACTAGCGTTTCGGTTACC 34840526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702315714176