Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02]
4,951 sequences; 691,429,809 total letters
Query= AAMG01002223.1
Length=366
Score E
Sequences producing significant alignments: (Bits) Value
seq4951 123 5e-26
seq320 107 4e-21
seq5 102 2e-19
seq9 87.8 4e-15
seq3 82.4 2e-13
seq11 80.6 6e-13
seq8 75.2 2e-11
>seq4951
Length=160137
Score = 123 bits (136), Expect = 5e-26
Identities = 194/279 (70%), Gaps = 18/279 (6%)
Strand=Plus/Minus
Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60
|||||||||||| |||||||||||||||||||| || ||| || |
Sbjct 106018 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCGTCAT-----------T 105970
Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120
| || ||| | |||||||||| || | |||| | ||||| ||| |||||
Sbjct 105969 GC------TTCTTCTCCGGGAAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCACGC 105917
Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180
| | ||| |||| || ||| |||||| || ||||| ||||||||||||||||||
Sbjct 105916 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 105857
Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240
|||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| ||
Sbjct 105856 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 105797
Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279
| | | || ||| || || || | || |||| |||||
Sbjct 105796 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 105758
Score = 123 bits (136), Expect = 5e-26
Identities = 194/279 (70%), Gaps = 18/279 (6%)
Strand=Plus/Plus
Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60
|||||||||||| |||||||||||||||||||| || ||| || |
Sbjct 142992 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCGTCAT-----------T 143040
Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120
| || ||| | |||||||||| || | |||| | ||||| ||| |||||
Sbjct 143041 GC------TTCTTCTCCGGGAAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCACGC 143093
Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180
| | ||| |||| || ||| |||||| || ||||| ||||||||||||||||||
Sbjct 143094 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 143153
Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240
|||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| ||
Sbjct 143154 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 143213
Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279
| | | || ||| || || || | || |||| |||||
Sbjct 143214 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 143252
>seq320
Length=36444
Score = 107 bits (118), Expect = 4e-21
Identities = 160/228 (70%), Gaps = 18/228 (8%)
Strand=Plus/Minus
Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60
|||| ||||||| |||||||||||||||||||| || ||| || |
Sbjct 25583 GGCTACTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACTGTCAT-----------T 25535
Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120
| || ||| | | |||||||||| |||| |||| | ||||| ||| |||||
Sbjct 25534 GC------TTCTTCTCCTGGAAAAGAAGTTCACAACCCGTGGG-CCTTCTACCTCCACGC 25482
Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180
| | ||| |||| || || |||||| || ||||| |||| ||||||| |||||
Sbjct 25481 GGCATTGCTCCGTCAGGCTTTCACCCATTGCGGAAAATTCCCCACTACTGCCTCTCGTAG 25422
Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228
|||| ||| |||||||||||| | | ||||| || | ||||||||||
Sbjct 25421 GAGTCTGGGCCGTGTCTCAGTCCTAGTGTGGCTGATCATCCTCTCAGA 25374
>seq5
Length=74729908
Score = 102 bits (112), Expect = 2e-19
Identities = 112/148 (76%), Gaps = 1/148 (1%)
Strand=Plus/Plus
Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140
|||||||||| || | || | | ||||| ||| ||||| | | ||| |||| ||
Sbjct 8711724 AAAAGAAGTTCACGACCCATGGG-CCTTCTACCTCCACGCGGCATTGCTCCATCAGGCTT 8711782
Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200
||| |||||| || ||||| |||||||||||| ||||||||||||| || ||| ||||
Sbjct 8711783 TCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCTCGTAGGAGTTTGGGCCATGTATCAG 8711842
Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGA 228
| | | ||||| || | ||||||||||
Sbjct 8711843 TCCTAGTGTGGCTGATCATCCTCTCAGA 8711870
>seq9
Length=39018107
Score = 87.8 bits (96), Expect = 4e-15
Identities = 109/147 (74%), Gaps = 2/147 (1%)
Strand=Plus/Minus
Query 133 TCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCG 192
|||| || ||| |||||| || ||||| |||||| ||||||||||||||| ||| |||
Sbjct 28456770 TCAGGCTTTCG-CCATTGCGGAAAATTCCCCACTGC-GCCTCCCGTAGGAGTCTGGGCCG 28456713
Query 193 TGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGT 252
||| ||||| ||| ||||| || | ||||||| || | ||| ||| | | || |||
Sbjct 28456712 TGTATCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGT 28456653
Query 253 GGGCCGTTACCCCGCCTACTACCTAAT 279
|| || || | || |||| |||||
Sbjct 28456652 AAGCTATTGCCTCACCAACTAGCTAAT 28456626
>seq3
Length=80079441
Score = 82.4 bits (90), Expect = 2e-13
Identities = 63/75 (84%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 154 AATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGG 213
|| ||||| ||||||| |||||| ||||||| ||| |||||||||||| |||||||||
Sbjct 55014269 AAAATTCCCCACTGCTACCTCCCATAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCT 55014210
Query 214 GACCTTCCTCTCAGA 228
|| | ||||||| ||
Sbjct 55014209 GATCATCCTCTCGGA 55014195
Score = 75.2 bits (82), Expect = 2e-11
Identities = 64/79 (81%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 133 TCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCG 192
|||| || || |||||| || ||||| ||||||||||||||||| |||| ||| |||
Sbjct 16238558 TCAGGCTTTCACCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTATGAGTCTGGGCCG 16238617
Query 193 TGTCTCAGTTCCAATGTGG 211
||||||| | ||| |||||
Sbjct 16238618 TGTCTCACTCCCAGTGTGG 16238636
>seq11
Length=45509462
Score = 80.6 bits (88), Expect = 6e-13
Identities = 95/129 (74%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 167 GCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCA 226
|||||||||||||||||| ||| |||||||||||| ||| ||||| || | |||||||
Sbjct 19770425 GCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCG 19770484
Query 227 GAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGC 286
|| | ||| ||| | | || ||| || || || | || |||| ||||| ||||
Sbjct 19770485 GACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGC 19770544
Query 287 ATCCCCATC 295
| ||| ||
Sbjct 19770545 AAGCCCCTC 19770553
>seq8
Length=74329289
Score = 75.2 bits (82), Expect = 2e-11
Identities = 67/84 (80%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 145 CCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCC 204
|||||| || ||||| || ||||||||| ||||||||||||| |||||||| | ||
Sbjct 20393033 CCATTGCAGAAAATTCCCCATTGCTGCCTCTTCTAGGAGTTTGGACTGTGTCTCAATCCC 20392974
Query 205 AATGTGGGGGACCTTCCTCTCAGA 228
||||||| || | |||| |||||
Sbjct 20392973 AATGTGGTTGATCATCCTTTCAGA 20392950
Score = 75.2 bits (82), Expect = 2e-11
Identities = 67/84 (80%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 145 CCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCC 204
|||||| || ||||| || ||||||||| ||||||||||||| |||||||| | ||
Sbjct 26419474 CCATTGCAGAAAATTCCCCATTGCTGCCTCTTCTAGGAGTTTGGACTGTGTCTCAATCCC 26419415
Query 205 AATGTGGGGGACCTTCCTCTCAGA 228
||||||| || | |||| |||||
Sbjct 26419414 AATGTGGTTGATCATCCTTTCAGA 26419391
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1068747083712
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |