Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq4951 123 5e-26 seq320 107 4e-21 seq5 102 2e-19 seq9 87.8 4e-15 seq3 82.4 2e-13 seq11 80.6 6e-13 seq8 75.2 2e-11 >seq4951 Length=160137 Score = 123 bits (136), Expect = 5e-26 Identities = 194/279 (70%), Gaps = 18/279 (6%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| || ||| || | Sbjct 106018 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCGTCAT-----------T 105970 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| | |||||||||| || | |||| | ||||| ||| ||||| Sbjct 105969 GC------TTCTTCTCCGGGAAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCACGC 105917 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 105916 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 105857 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| || Sbjct 105856 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 105797 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| || || || | || |||| ||||| Sbjct 105796 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 105758 Score = 123 bits (136), Expect = 5e-26 Identities = 194/279 (70%), Gaps = 18/279 (6%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| || ||| || | Sbjct 142992 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCGTCAT-----------T 143040 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| | |||||||||| || | |||| | ||||| ||| ||||| Sbjct 143041 GC------TTCTTCTCCGGGAAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCACGC 143093 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 143094 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 143153 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| || Sbjct 143154 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 143213 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| || || || | || |||| ||||| Sbjct 143214 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 143252 >seq320 Length=36444 Score = 107 bits (118), Expect = 4e-21 Identities = 160/228 (70%), Gaps = 18/228 (8%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||| ||||||| |||||||||||||||||||| || ||| || | Sbjct 25583 GGCTACTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACTGTCAT-----------T 25535 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| | | |||||||||| |||| |||| | ||||| ||| ||||| Sbjct 25534 GC------TTCTTCTCCTGGAAAAGAAGTTCACAACCCGTGGG-CCTTCTACCTCCACGC 25482 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || || |||||| || ||||| |||| ||||||| ||||| Sbjct 25481 GGCATTGCTCCGTCAGGCTTTCACCCATTGCGGAAAATTCCCCACTACTGCCTCTCGTAG 25422 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228 |||| ||| |||||||||||| | | ||||| || | |||||||||| Sbjct 25421 GAGTCTGGGCCGTGTCTCAGTCCTAGTGTGGCTGATCATCCTCTCAGA 25374 >seq5 Length=74729908 Score = 102 bits (112), Expect = 2e-19 Identities = 112/148 (76%), Gaps = 1/148 (1%) Strand=Plus/Plus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| || | || | | ||||| ||| ||||| | | ||| |||| || Sbjct 8711724 AAAAGAAGTTCACGACCCATGGG-CCTTCTACCTCCACGCGGCATTGCTCCATCAGGCTT 8711782 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| || ||||| |||||||||||| ||||||||||||| || ||| |||| Sbjct 8711783 TCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCTCGTAGGAGTTTGGGCCATGTATCAG 8711842 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGA 228 | | | ||||| || | |||||||||| Sbjct 8711843 TCCTAGTGTGGCTGATCATCCTCTCAGA 8711870 >seq9 Length=39018107 Score = 87.8 bits (96), Expect = 4e-15 Identities = 109/147 (74%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 133 TCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCG 192 |||| || ||| |||||| || ||||| |||||| ||||||||||||||| ||| ||| Sbjct 28456770 TCAGGCTTTCG-CCATTGCGGAAAATTCCCCACTGC-GCCTCCCGTAGGAGTCTGGGCCG 28456713 Query 193 TGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGT 252 ||| ||||| ||| ||||| || | ||||||| || | ||| ||| | | || ||| Sbjct 28456712 TGTATCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGT 28456653 Query 253 GGGCCGTTACCCCGCCTACTACCTAAT 279 || || || | || |||| ||||| Sbjct 28456652 AAGCTATTGCCTCACCAACTAGCTAAT 28456626 >seq3 Length=80079441 Score = 82.4 bits (90), Expect = 2e-13 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 154 AATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGG 213 || ||||| ||||||| |||||| ||||||| ||| |||||||||||| ||||||||| Sbjct 55014269 AAAATTCCCCACTGCTACCTCCCATAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCT 55014210 Query 214 GACCTTCCTCTCAGA 228 || | ||||||| || Sbjct 55014209 GATCATCCTCTCGGA 55014195 Score = 75.2 bits (82), Expect = 2e-11 Identities = 64/79 (81%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 133 TCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCG 192 |||| || || |||||| || ||||| ||||||||||||||||| |||| ||| ||| Sbjct 16238558 TCAGGCTTTCACCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTATGAGTCTGGGCCG 16238617 Query 193 TGTCTCAGTTCCAATGTGG 211 ||||||| | ||| ||||| Sbjct 16238618 TGTCTCACTCCCAGTGTGG 16238636 >seq11 Length=45509462 Score = 80.6 bits (88), Expect = 6e-13 Identities = 95/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 167 GCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCA 226 |||||||||||||||||| ||| |||||||||||| ||| ||||| || | ||||||| Sbjct 19770425 GCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCG 19770484 Query 227 GAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGC 286 || | ||| ||| | | || ||| || || || | || |||| ||||| |||| Sbjct 19770485 GACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGC 19770544 Query 287 ATCCCCATC 295 | ||| || Sbjct 19770545 AAGCCCCTC 19770553 >seq8 Length=74329289 Score = 75.2 bits (82), Expect = 2e-11 Identities = 67/84 (80%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 145 CCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCC 204 |||||| || ||||| || ||||||||| ||||||||||||| |||||||| | || Sbjct 20393033 CCATTGCAGAAAATTCCCCATTGCTGCCTCTTCTAGGAGTTTGGACTGTGTCTCAATCCC 20392974 Query 205 AATGTGGGGGACCTTCCTCTCAGA 228 ||||||| || | |||| ||||| Sbjct 20392973 AATGTGGTTGATCATCCTTTCAGA 20392950 Score = 75.2 bits (82), Expect = 2e-11 Identities = 67/84 (80%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 145 CCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCC 204 |||||| || ||||| || ||||||||| ||||||||||||| |||||||| | || Sbjct 26419474 CCATTGCAGAAAATTCCCCATTGCTGCCTCTTCTAGGAGTTTGGACTGTGTCTCAATCCC 26419415 Query 205 AATGTGGGGGACCTTCCTCTCAGA 228 ||||||| || | |||| ||||| Sbjct 26419414 AATGTGGTTGATCATCCTTTCAGA 26419391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068747083712