Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq153 475 1e-131 seq80 136 1e-29 >seq153 Length=83015 Score = 475 bits (526), Expect = 1e-131 Identities = 406/497 (82%), Gaps = 3/497 (1%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 33442 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 33383 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||| |||||||||||||||| |||||||| | || |||| Sbjct 33382 GTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTC 33323 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | || | ||||| | || |||||| || | ||||||| ||||||| ||||||||| Sbjct 33322 TTGAAAGAGAGGGGTGCC-TTCGGGA-ACGTGGACACAGGTGGTGCATGGCTGTCGTCAG 33265 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 |||||| ||| || ||||||||||||||||||||||||||||||||| | |||||||| Sbjct 33264 CTCGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGC 33205 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300 || | || |||| || || || | |||||||||||| || ||||||||||||| ||| Sbjct 33204 CACCGTTGAGTTTGGAACCCTGAACAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGAT 33145 Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360 |||||||| ||||||||||||||||| ||||| |||||||||||||||||| | || Sbjct 33144 GACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCCGGGAC 33085 Query 361 AAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG 420 |||||| |||| |||||||| ||| || ||| ||| || |||||||||||||| Sbjct 33084 AAAGGGTCGCGATCCCGCGAGGGTGAGCTAACTCCAAAAACCCGTCCTCAGTTCGGATTG 33025 Query 421 TAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTA 479 || |||||||||| || ||||||| ||||||||||||||||| | |||| ||| | Sbjct 33024 CAGGCTGCAACTCGCCTGCATGAAGCCGGAATCGCTAGTAATCGCCGGTCAGCCATACGG 32965 Query 480 CGGTGAATACGTTCCCG 496 |||||||| |||||||| Sbjct 32964 CGGTGAATTCGTTCCCG 32948 >seq80 Length=21647715 Score = 136 bits (150), Expect = 1e-29 Identities = 160/217 (74%), Gaps = 21/217 (10%) Strand=Plus/Minus Query 18 AACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGC 77 ||||||||||||||||||||| || ||| |||||||||| ||||||||||||||| | | Sbjct 16471723 AACTCAAAGGAATTGACGGGGGCCTGCAAAAGCGGTGGAACATGTGGTTTAATTCAATAC 16471664 Query 78 AACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGATAGAGGTTTCC 137 ||| || | |||||||||| ||||||| | ||| | | | | ||| Sbjct 16471663 AACACGCAAAACCTTACCATCCCTTGACA---TATGA-----------AAAAACCTATCC 16471618 Query 138 CCTTCGG---GGGACAGAGT----GACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGT 190 ||| || || | | ||||||| ||||||| ||||||||||||||||||| Sbjct 16471617 TTAACGGGATGGTACTCACTTTCATACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTCGT 16471558 Query 191 GAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCT 227 |||||||| ||| |||||| |||||||| |||||| Sbjct 16471557 GAGATGTTTGGTCAAGTCCTATAACGAGCGAAACCCT 16471521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503997593600