Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq153 230 5e-58 seq139 77.0 7e-12 >seq153 Length=83015 Score = 230 bits (254), Expect = 5e-58 Identities = 253/329 (77%), Gaps = 21/329 (6%) Strand=Plus/Plus Query 10 CCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAA 69 ||| || |||||| | | |||||||||||| || |||||||||||||||||| || Sbjct 33887 CCGTAGGCCTTCTACCTC-CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAA 33944 Query 70 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGA 129 |||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||| Sbjct 33945 AATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGA 34004 Query 130 TCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGC 189 |||||||||| |||||| ||| |||| |||||||||| ||| ||| |||||||||||||| Sbjct 34005 TCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGC 34064 Query 190 TAATCCGAC-CTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGT 248 ||||| ||| | || | | || || ||| || ||| |||| | | | Sbjct 34065 TAATCAGACGCGAGCCCCTCCT-----CG---GGC-----GGATTCCTCCTTTTGCTCCT 34111 Query 249 AGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGAT 306 | | || | ||||||||| |||||||| ||| | ||| || ||| ||||| | Sbjct 34112 CAG-CCTACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGT 34168 Query 307 TCCTAGGCATTACTCACCCGTCCGCCGCT 335 || || || ||||||||||||||||| || Sbjct 34169 TCTTACGCGTTACTCACCCGTCCGCCACT 34197 >seq139 Length=20634497 Score = 77.0 bits (84), Expect = 7e-12 Identities = 50/55 (91%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 52 CTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 106 || ||||||||||| || |||||||||||||||||||||||||||||||| ||| Sbjct 18809579 CTCTCGCCCATTGTGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 18809633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071998284800