Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31]
160 sequences; 229,211,023 total letters
Query= AAMG01001213.1
Length=600
Score E
Sequences producing significant alignments: (Bits) Value
seq153 264 4e-68
seq27 264 4e-68
seq98 113 2e-22
seq77 80.6 1e-12
>seq153
Length=83015
Score = 264 bits (292), Expect = 4e-68
Identities = 345/470 (73%), Gaps = 27/470 (6%)
Strand=Plus/Minus
Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196
||||| ||| || |||||||||||||||||||||| | | ||| || |||| ||||||
Sbjct 2040 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 1981
Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256
||||| ||||| |||||| || | |||||||| | ||| ||||||| ||||||| ||
Sbjct 1980 CCCTAACCACAACTCATCCGCTGATTTTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 1921
Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314
| |||| |||||| |||| ||| |||||||||| | ||||||| | | | | |||
Sbjct 1920 TTCACCCAAGCTTCATCCTGGTCATAGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 1861
Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370
|| | ||||||| |||||||||||||||||||| || || ||||
Sbjct 1860 ACAAT----TGCCCTATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAA 1808
Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429
|| || ||| | | | |||| |||||||||||||| |||||||| |||| |
Sbjct 1807 CCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA----GA 1754
Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489
|| | ||| | |||| || | ||| || | ||||||| || |||||||||
Sbjct 1753 GCC--CAGGGCTC-----CTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCAC 1701
Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549
|||||| ||||| ||||||||| ||||||||||||||| | |||||||||||||| |
Sbjct 1700 TCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCA 1641
Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599
||||||||||| ||| |||||||| | |||||||||| ||| ||
Sbjct 1640 GGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 1591
Score = 264 bits (292), Expect = 4e-68
Identities = 345/470 (73%), Gaps = 27/470 (6%)
Strand=Plus/Plus
Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196
||||| ||| || |||||||||||||||||||||| | | ||| || |||| ||||||
Sbjct 29531 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 29590
Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256
||||| ||||| |||||| || | |||||||| | ||| ||||||| ||||||| ||
Sbjct 29591 CCCTAACCACAACTCATCCGCTGATTTTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 29650
Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314
| |||| |||||| |||| ||| |||||||||| | ||||||| | | | | |||
Sbjct 29651 TTCACCCAAGCTTCATCCTGGTCATAGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 29710
Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370
|| | ||||||| |||||||||||||||||||| || || ||||
Sbjct 29711 ACAAT----TGCCCTATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAA 29763
Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429
|| || ||| | | | |||| |||||||||||||| |||||||| |||| |
Sbjct 29764 CCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA----GA 29817
Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489
|| | ||| | |||| || | ||| || | ||||||| || |||||||||
Sbjct 29818 GCC--CAGGGCTC-----CTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCAC 29870
Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549
|||||| ||||| ||||||||| ||||||||||||||| | |||||||||||||| |
Sbjct 29871 TCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCA 29930
Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599
||||||||||| ||| |||||||| | |||||||||| ||| ||
Sbjct 29931 GGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 29980
>seq27
Length=10330
Score = 264 bits (292), Expect = 4e-68
Identities = 345/470 (73%), Gaps = 27/470 (6%)
Strand=Plus/Plus
Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196
||||| ||| || |||||||||||||||||||||| | | ||| || |||| ||||||
Sbjct 8803 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 8862
Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256
||||| ||||| |||||| || | |||||||| | ||| ||||||| ||||||| ||
Sbjct 8863 CCCTAACCACAACTCATCCGCTGATTTTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 8922
Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314
| |||| |||||| |||| ||| |||||||||| | ||||||| | | | | |||
Sbjct 8923 TTCACCCAAGCTTCATCCTGGTCATAGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 8982
Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370
|| | ||||||| |||||||||||||||||||| || || ||||
Sbjct 8983 ACAAT----TGCCCTATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAA 9035
Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429
|| || ||| | | | |||| |||||||||||||| |||||||| |||| |
Sbjct 9036 CCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA----GA 9089
Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489
|| | ||| | |||| || | ||| || | ||||||| || |||||||||
Sbjct 9090 GCC--CAGGGCTC-----CTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCAC 9142
Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549
|||||| ||||| ||||||||| ||||||||||||||| | |||||||||||||| |
Sbjct 9143 TCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCA 9202
Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599
||||||||||| ||| |||||||| | |||||||||| ||| ||
Sbjct 9203 GGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 9252
>seq98
Length=12372032
Score = 113 bits (124), Expect = 2e-22
Identities = 94/115 (82%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196
||||| ||| || |||||||||||||||||||||| | | ||| || |||| ||||||
Sbjct 5417032 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 5417091
Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCAC 251
||||| ||||| |||||| || | |||||||| | ||| ||||||| |||||||
Sbjct 5417092 CCCTAACCACAACTCATCCGCTGATTTTTCAACATCAGTCGGTTCGGACCTCCAC 5417146
>seq77
Length=18658056
Score = 80.6 bits (88), Expect = 1e-12
Identities = 102/139 (73%), Gaps = 1/139 (1%)
Strand=Plus/Minus
Query 88 GGGCC-CCCTAGACCATCCAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTA 146
||||| |||||| |||| ||||||||||||| || | ||| | ||| || |
Sbjct 2501900 GGGCCACCCTAGCCCATTGAGTGCTCTACCTCGGGCCATCGACATCATATGCTCTACTGA 2501841
Query 147 AATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCAC 206
||| |||||| ||| ||| |||||| | | ||| ||||||||||||||||| ||||
Sbjct 2501840 AATAGATTTCGCGGAAAACTAGCTATATCCGATCTTGGTTGGCCTTTCACCCCTAGCCAC 2501781
Query 207 AGGTCATCCCCTCAGTTTT 225
| ||||| ||| | ||||
Sbjct 2501780 AAGTCATGCCCGTATTTTT 2501762
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1817597091840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |