Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq92 100 4e-16 seq115 93.3 6e-14 >seq92 Length=17487894 Score = 100 bits (110), Expect = 4e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 162615 CGGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTCGTCACACGCAAGAT 162674 ||| || || ||||| ||||| ||||| |||| |||| ||||| || || ||||| Sbjct 15441141 CGGAATCCTGTTCAACCACGAGTCACCACGCCGAGGGGAGAATTTCGTGACTCGGAAGAT 15441200 Query 162675 CGTCCGAGCCTTGTCCCGAATTAGTGTGGGACTCCAAAGTGATCTACAACTTGGAAACCT 162734 ||||| ||| | || | || ||| | || | | || | || |||||| | Sbjct 15441201 AACTCGAGCATTGGGAAGGATCAAGGTTGGATTGCAGACGAAGCTTTACCTCGGAAACAT 15441260 Query 162735 CAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGTAGAGGCTATGTGGTTGATGCT 162794 | || | | ||||||||| ||| ||||||||| || || |||||||||||||| Sbjct 15441261 ACAAGCTTCAAGAGACTGGGGATTCGCTGGAGACTACGTTGAAGCAATGTGGTTGATGCT 15441320 Query 162795 TCAGCAAGAGAAGCCAGATGATTATGTGATCGCAACTG 162832 ||||||||||| ||||||||||| || | || |||| Sbjct 15441321 GCAGCAAGAGAAACCAGATGATTACGTTGTTGCGACTG 15441358 >seq115 Length=22393718 Score = 93.3 bits (102), Expect = 6e-14 Identities = 155/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 162607 GCCTCTAGCGGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTCGTCACA 162666 |||| || ||| || || ||||| ||||| ||||| |||| |||| ||||| || Sbjct 12979917 GCCTGTAACGGAATCCTGTTCAACCACGAGTCACCACGCCGAGGGGAGAACTTCGTGACG 12979858 Query 162667 CGCAAGATCGTCCGAGCCTTGTCCCGAATTAGTGTGGGACTCCAAAGTGATCTACAACTT 162726 | ||||| |||||||| || || | || || | || || | || || Sbjct 12979857 AGGAAGATAACAAGAGCCTTGGGACGGATCAAGGTAGGTTTGCAGAGGAAGCTCTTCCTG 12979798 Query 162727 GGAAACCTCAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGTAGAGGCTATGTGG 162786 ||||| || | || | | ||||||||| ||| || ||||| ||||| |||||| Sbjct 12979797 GGAAATCTACAGGCGTCAAGAGACTGGGGATTCGCAGGGGATTACGTGGAGGCAATGTGG 12979738 Query 162787 TTGATGCTTCAGCAAGAGAAGCCAGATGATTATGTGATCGCAAC 162830 ||||| | ||||||||||||||||||||||| || | ||||| Sbjct 12979737 CTGATGTTGCAGCAAGAGAAGCCAGATGATTACGTTGTGGCAAC 12979694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691457817081600