Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq33 398 1e-108 >seq33 Length=9343251 Score = 398 bits (440), Expect = 1e-108 Identities = 245/256 (96%), Gaps = 4/256 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 7318084 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 7318027 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7318026 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 7317967 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||| Sbjct 7317966 CCCGGGCCTGTCGGCCAAGGTGTGA-ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 7317908 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct 7317907 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAACG 7317848 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 7317847 GCCATAGTCCCTCTAA 7317832 Score = 398 bits (440), Expect = 1e-108 Identities = 245/256 (96%), Gaps = 4/256 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 7327652 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 7327595 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7327594 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 7327535 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||| Sbjct 7327534 CCCGGGCCTGTCGGCCAAGGTGTGA-ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 7327476 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct 7327475 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAACG 7327416 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 7327415 GCCATAGTCCCTCTAA 7327400 Score = 398 bits (440), Expect = 1e-108 Identities = 245/256 (96%), Gaps = 4/256 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 7337428 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 7337371 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7337370 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 7337311 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||| Sbjct 7337310 CCCGGGCCTGTCGGCCAAGGTGTGA-ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 7337252 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct 7337251 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAACG 7337192 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 7337191 GCCATAGTCCCTCTAA 7337176 Score = 381 bits (422), Expect = 9e-104 Identities = 243/256 (95%), Gaps = 6/256 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 7347198 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 7347141 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7347140 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 7347081 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||| Sbjct 7347080 CCCGGGCCTGTCGGCCAAGGTG-TGAACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 7347022 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||| | Sbjct 7347021 CCCAGAACATCTAA-GGCATCACAGACCTGTTATTGCCTC-AACTTCCTTGGCCTAAACG 7346964 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 7346963 GCCATAGTCCCTCTAA 7346948 Score = 351 bits (388), Expect = 1e-94 Identities = 237/256 (93%), Gaps = 12/256 (5%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| Sbjct 7356968 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGA--TTC 7356912 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 7356911 CTCGTTGA-GACCAACAATTGCAATGATCTATCCCCATCACGATGAA-TTTCAAAGATTA 7356854 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||| Sbjct 7356853 CCCGGGCCTGTCGGCCAAGGTGTGA-ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 7356795 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||| |||||||||||| ||||||| ||||||||| | Sbjct 7356794 CCCAGAACATCTAAGGGCATCACA----TGTTATTGCCTC-AACTTCCTTGGCCTAAACG 7356740 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 7356739 GCCATAGTCCCTCTAA 7356724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751995352170