Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq33 232 3e-58 >seq33 Length=9343251 Score = 232 bits (256), Expect = 3e-58 Identities = 222/281 (79%), Gaps = 5/281 (2%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 || ||||||||| ||||||||||||||||||| |||| | ||||||| ||||| | Sbjct 7319518 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGTGAGTA 7319577 Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGAC 522 ||||||| | || || ||| ||| || || || ||| ||||||||| |||| Sbjct 7319578 AACCCGTAAGGCGCAAGGAAGCTGATTGGCGG---GATCCCTCACGGGTGCACCGCCGAC 7319634 Query 523 CGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATG 582 ||| | |||| | | || || || |||| |||||| |||| ||||||||||||||| Sbjct 7319635 CGACCTTGATCTTTAGAGAAGGGTTCGAGTGTGAGCATGCCTGTCGGGACCCGAAAGATG 7319694 Query 583 GTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTT 642 ||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| | Sbjct 7319695 GTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGATA 7319754 Query 643 CTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 7319755 CTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 7319795 Score = 232 bits (256), Expect = 3e-58 Identities = 222/281 (79%), Gaps = 5/281 (2%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 || ||||||||| ||||||||||||||||||| |||| | ||||||| ||||| | Sbjct 7329082 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGTGAGTA 7329141 Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGAC 522 ||||||| | || || ||| ||| || || || ||| ||||||||| |||| Sbjct 7329142 AACCCGTAAGGCGCAAGGAAGCTGATTGGCGG---GATCCCTCACGGGTGCACCGCCGAC 7329198 Query 523 CGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATG 582 ||| | |||| | | || || || |||| |||||| |||| ||||||||||||||| Sbjct 7329199 CGACCTTGATCTTTAGAGAAGGGTTCGAGTGTGAGCATGCCTGTCGGGACCCGAAAGATG 7329258 Query 583 GTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTT 642 ||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| | Sbjct 7329259 GTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGATA 7329318 Query 643 CTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 7329319 CTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 7329359 Score = 232 bits (256), Expect = 3e-58 Identities = 222/281 (79%), Gaps = 5/281 (2%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 || ||||||||| ||||||||||||||||||| |||| | ||||||| ||||| | Sbjct 7338861 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGTGAGTA 7338920 Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGAC 522 ||||||| | || || ||| ||| || || || ||| ||||||||| |||| Sbjct 7338921 AACCCGTAAGGCGCAAGGAAGCTGATTGGCGG---GATCCCTCACGGGTGCACCGCCGAC 7338977 Query 523 CGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATG 582 ||| | |||| | | || || || |||| |||||| |||| ||||||||||||||| Sbjct 7338978 CGACCTTGATCTTTAGAGAAGGGTTCGAGTGTGAGCATGCCTGTCGGGACCCGAAAGATG 7339037 Query 583 GTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTT 642 ||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| | Sbjct 7339038 GTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGATA 7339097 Query 643 CTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 7339098 CTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 7339138 Score = 224 bits (248), Expect = 4e-56 Identities = 222/281 (79%), Gaps = 7/281 (2%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGG-GTGTCA 463 || ||||||||| ||||||||||||||||||| |||| | ||||||| || | || | Sbjct 7348628 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCACGGGTGAGT-A 7348686 Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGAC 522 ||||||| | || || ||| ||| || || || ||| ||||||||| |||| Sbjct 7348687 AACCCGTAAGGCGCAAGGAAGCTGATTGGCGG---GATCCCTCACGGGTGCACCGCCGAC 7348743 Query 523 CGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATG 582 ||| | |||| | | || || || |||| |||||| |||| ||||||||||||||| Sbjct 7348744 CGACCTTGATCTTTAGAGAAGGGTTCGAGTGTGAGCATGCCTGTCGGGACCCGAAAGATG 7348803 Query 583 GTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTT 642 ||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| | Sbjct 7348804 GTGAACTATGCCTGAGC-GGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGATA 7348862 Query 643 CTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 7348863 CTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 7348903 Score = 224 bits (248), Expect = 4e-56 Identities = 221/281 (79%), Gaps = 6/281 (2%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 || ||||||||| ||||||||||||||||||| |||| | ||||||| ||||| | Sbjct 7358396 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGTGAGTA 7358455 Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGAC 522 ||||||| | || || ||| ||| || || || ||| ||||||||| |||| Sbjct 7358456 AACCCGTAAGGCGCAAGGAAGCTGATTGGCGG---GATCCCTCACGGGTGCACCGCCGAC 7358512 Query 523 CGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATG 582 ||| | |||| | | || || || |||| |||||| |||| ||||||||||||||| Sbjct 7358513 CGACCTTGATCTTTAGAGAAGGGTTCGAGTGTGAGCATGCCTGTCGGGACCCGAAAGATG 7358572 Query 583 GTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTT 642 ||||||||||| ||| ||| ||||||||||||||||||||||||||| ||||||| | Sbjct 7358573 GTGAACTATGC-TGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGATA 7358631 Query 643 CTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 7358632 CTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 7358672 Score = 163 bits (180), Expect = 1e-37 Identities = 135/165 (82%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 || |||||||| |||||||||||||||||| | || ||| |||||||| | || || || Sbjct 7319131 TCTACGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCCGTCCAAGGC 7319190 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 ||||||| ||| |||||||||||||| ||||||| | || |||||||||||| |||| Sbjct 7319191 TAAATATGGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGTAAAGATGAAAAGGACTT 7319250 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 || ||||||||| ||| || | ||||||||| | ||||||||| Sbjct 7319251 TGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 7319295 Score = 163 bits (180), Expect = 1e-37 Identities = 135/165 (82%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 || |||||||| |||||||||||||||||| | || ||| |||||||| | || || || Sbjct 7338474 TCTACGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCCGTCCAAGGC 7338533 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 ||||||| ||| |||||||||||||| ||||||| | || |||||||||||| |||| Sbjct 7338534 TAAATATGGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGTAAAGATGAAAAGGACTT 7338593 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 || ||||||||| ||| || | ||||||||| | ||||||||| Sbjct 7338594 TGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 7338638 Score = 163 bits (180), Expect = 1e-37 Identities = 135/165 (82%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 || |||||||| |||||||||||||||||| | || ||| |||||||| | || || || Sbjct 7348242 TCTACGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCCGTCCAAGGC 7348301 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 ||||||| ||| |||||||||||||| ||||||| | || |||||||||||| |||| Sbjct 7348302 TAAATATGGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGTAAAGATGAAAAGGACTT 7348361 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 || ||||||||| ||| || | ||||||||| | ||||||||| Sbjct 7348362 TGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 7348406 Score = 154 bits (170), Expect = 6e-35 Identities = 134/165 (81%), Gaps = 1/165 (1%) Strand=Plus/Plus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 || |||||||| |||||||||||||||||| | || ||| |||||||| | || || || Sbjct 7328697 TCTACGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCCGTCCAAGGC 7328756 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 ||||||| ||| |||||||||||||| ||||||| | || |||||||||||| || | Sbjct 7328757 TAAATATGGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGTAAAGATGAAAAGGAC-T 7328815 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 || ||||||||| ||| || | ||||||||| | ||||||||| Sbjct 7328816 TGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 7328860 Score = 147 bits (162), Expect = 9e-33 Identities = 133/165 (81%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 || |||||||| |||||||||||||||||| | || ||| |||||||| | || | || Sbjct 7358012 TCTACGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCCGTCCAG-GC 7358070 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 ||||||| ||| |||||||||||||| ||||||| | || ||||||| |||| |||| Sbjct 7358071 TAAATATGGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGTAAAGATG-AAAGGACTT 7358129 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 || ||||||||| ||| || | ||||||||| | ||||||||| Sbjct 7358130 TGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 7358174 Score = 123 bits (136), Expect = 1e-25 Identities = 136/178 (76%), Gaps = 15/178 (8%) Strand=Plus/Plus Query 509 GGTGCACCATCGACCGATCCTGATGTCTTCGGA---TGGATTTGAGTAAGAGCATAGCTG 565 |||| ||| ||||||| | |||| |||| || ||| ||||||| |||||| ||| Sbjct 7229576 GGTGAACCGCCGACCGACCTTGAT--CTTCAGAGAATGG-TTTGAGTGTGAGCATGCCTG 7229632 Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 || ||| ||||||| |||||||||| | |||||||||||||||||| |||| Sbjct 7229633 TTAGGA-----AAGATGG----CTATGCCTGAGTGCAGTGAAGCCAGAGGAAACTGTGGT 7229683 Query 626 GGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||||||||||| | || | | ||||||| || ||| | ||||||||||||| || Sbjct 7229684 GGAGGCTCGCAGCGATAATGACATACAAATCGTTCATCAGAATTGGGTATAGGGGTGA 7229741 Score = 98.7 bits (108), Expect = 4e-18 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 575 GAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCG 634 |||||||||||| |||||||||| | | |||| |||| |||| ||||||||||| || Sbjct 7237000 GAAAGATGGTGAGCTATGCCTGAGTGCAGCGAAGACAGAATAAACCCTGGTGGAGGCCCG 7237059 Query 635 CAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||| | || | | |||||| |||||| | ||||||||||||| || Sbjct 7237060 CAGCGATAATGACATACAAATCATTCGTCAGAATTGGGTATAGGGGTGA 7237108 Score = 98.7 bits (108), Expect = 4e-18 Identities = 129/177 (73%), Gaps = 9/177 (5%) Strand=Plus/Plus Query 509 GGTGCACCATCGACCGATCCTGATGTCTTCGGAT--GGATTTGAGTAAGAGCATAGCTGT 566 |||||||| ||||||| | |||| |||| || || || |||| |||||| |||| Sbjct 7285245 GGTGCACCGCCGACCGACCTTGAT--CTTCAGAGAAGGGTTCGAGTGTGAGCATGCCTGT 7285302 Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 |||| |||||||||| || ||||||| | | |||| ||| ||||||||||| Sbjct 7285303 CGGGA-----AAGATGGTGAGCTTTGCCTGAGTGCAGCAAAGCTAGAATAAACTCTGGTG 7285357 Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||| ||||||| | || | | || | | |||||| | ||| ||||||||| || Sbjct 7285358 GAGGCCCGCAGCGATAATGACATACACGTTGTTCGTCAGAATTGAGTATAGGGGTGA 7285414 Score = 95.1 bits (104), Expect = 5e-17 Identities = 85/106 (80%), Gaps = 3/106 (3%) Strand=Plus/Plus Query 93 GCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCAC 152 ||||||||| ||| |||||||||||||| ||||||| |||| ||| |||||| Sbjct 7233131 GCTAAATATGGGCGAGAGACCGATAGCGAACAAGTATCGTGAGGTAAAAATGAAA---GA 7233187 Query 153 TTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGC 198 |||| ||||||||| ||| || | |||||||||||| |||||||| Sbjct 7233188 TTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTTGAGAGGGAAGC 7233233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079986314900