Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05]
638 sequences; 243,110,105 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq33 232 3e-58
>seq33
Length=9343251
Score = 232 bits (256), Expect = 3e-58
Identities = 222/281 (79%), Gaps = 5/281 (2%)
Strand=Plus/Plus
Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463
|| ||||||||| ||||||||||||||||||| |||| | ||||||| ||||| |
Sbjct 7319518 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGTGAGTA 7319577
Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGAC 522
||||||| | || || ||| ||| || || || ||| ||||||||| ||||
Sbjct 7319578 AACCCGTAAGGCGCAAGGAAGCTGATTGGCGG---GATCCCTCACGGGTGCACCGCCGAC 7319634
Query 523 CGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATG 582
||| | |||| | | || || || |||| |||||| |||| |||||||||||||||
Sbjct 7319635 CGACCTTGATCTTTAGAGAAGGGTTCGAGTGTGAGCATGCCTGTCGGGACCCGAAAGATG 7319694
Query 583 GTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTT 642
||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| |
Sbjct 7319695 GTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGATA 7319754
Query 643 CTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
||| ||||||||||| ||||| | ||||||||||||||||
Sbjct 7319755 CTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 7319795
Score = 232 bits (256), Expect = 3e-58
Identities = 222/281 (79%), Gaps = 5/281 (2%)
Strand=Plus/Plus
Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463
|| ||||||||| ||||||||||||||||||| |||| | ||||||| ||||| |
Sbjct 7329082 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGTGAGTA 7329141
Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGAC 522
||||||| | || || ||| ||| || || || ||| ||||||||| ||||
Sbjct 7329142 AACCCGTAAGGCGCAAGGAAGCTGATTGGCGG---GATCCCTCACGGGTGCACCGCCGAC 7329198
Query 523 CGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATG 582
||| | |||| | | || || || |||| |||||| |||| |||||||||||||||
Sbjct 7329199 CGACCTTGATCTTTAGAGAAGGGTTCGAGTGTGAGCATGCCTGTCGGGACCCGAAAGATG 7329258
Query 583 GTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTT 642
||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| |
Sbjct 7329259 GTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGATA 7329318
Query 643 CTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
||| ||||||||||| ||||| | ||||||||||||||||
Sbjct 7329319 CTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 7329359
Score = 232 bits (256), Expect = 3e-58
Identities = 222/281 (79%), Gaps = 5/281 (2%)
Strand=Plus/Plus
Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463
|| ||||||||| ||||||||||||||||||| |||| | ||||||| ||||| |
Sbjct 7338861 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGTGAGTA 7338920
Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGAC 522
||||||| | || || ||| ||| || || || ||| ||||||||| ||||
Sbjct 7338921 AACCCGTAAGGCGCAAGGAAGCTGATTGGCGG---GATCCCTCACGGGTGCACCGCCGAC 7338977
Query 523 CGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATG 582
||| | |||| | | || || || |||| |||||| |||| |||||||||||||||
Sbjct 7338978 CGACCTTGATCTTTAGAGAAGGGTTCGAGTGTGAGCATGCCTGTCGGGACCCGAAAGATG 7339037
Query 583 GTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTT 642
||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| |
Sbjct 7339038 GTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGATA 7339097
Query 643 CTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
||| ||||||||||| ||||| | ||||||||||||||||
Sbjct 7339098 CTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 7339138
Score = 224 bits (248), Expect = 4e-56
Identities = 222/281 (79%), Gaps = 7/281 (2%)
Strand=Plus/Plus
Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGG-GTGTCA 463
|| ||||||||| ||||||||||||||||||| |||| | ||||||| || | || |
Sbjct 7348628 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCACGGGTGAGT-A 7348686
Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGAC 522
||||||| | || || ||| ||| || || || ||| ||||||||| ||||
Sbjct 7348687 AACCCGTAAGGCGCAAGGAAGCTGATTGGCGG---GATCCCTCACGGGTGCACCGCCGAC 7348743
Query 523 CGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATG 582
||| | |||| | | || || || |||| |||||| |||| |||||||||||||||
Sbjct 7348744 CGACCTTGATCTTTAGAGAAGGGTTCGAGTGTGAGCATGCCTGTCGGGACCCGAAAGATG 7348803
Query 583 GTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTT 642
||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| |
Sbjct 7348804 GTGAACTATGCCTGAGC-GGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGATA 7348862
Query 643 CTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
||| ||||||||||| ||||| | ||||||||||||||||
Sbjct 7348863 CTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 7348903
Score = 224 bits (248), Expect = 4e-56
Identities = 221/281 (79%), Gaps = 6/281 (2%)
Strand=Plus/Plus
Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463
|| ||||||||| ||||||||||||||||||| |||| | ||||||| ||||| |
Sbjct 7358396 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGTGAGTA 7358455
Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGAC 522
||||||| | || || ||| ||| || || || ||| ||||||||| ||||
Sbjct 7358456 AACCCGTAAGGCGCAAGGAAGCTGATTGGCGG---GATCCCTCACGGGTGCACCGCCGAC 7358512
Query 523 CGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATG 582
||| | |||| | | || || || |||| |||||| |||| |||||||||||||||
Sbjct 7358513 CGACCTTGATCTTTAGAGAAGGGTTCGAGTGTGAGCATGCCTGTCGGGACCCGAAAGATG 7358572
Query 583 GTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTT 642
||||||||||| ||| ||| ||||||||||||||||||||||||||| ||||||| |
Sbjct 7358573 GTGAACTATGC-TGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGATA 7358631
Query 643 CTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
||| ||||||||||| ||||| | ||||||||||||||||
Sbjct 7358632 CTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 7358672
Score = 163 bits (180), Expect = 1e-37
Identities = 135/165 (82%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94
|| |||||||| |||||||||||||||||| | || ||| |||||||| | || || ||
Sbjct 7319131 TCTACGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCCGTCCAAGGC 7319190
Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154
||||||| ||| |||||||||||||| ||||||| | || |||||||||||| ||||
Sbjct 7319191 TAAATATGGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGTAAAGATGAAAAGGACTT 7319250
Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
|| ||||||||| ||| || | ||||||||| | |||||||||
Sbjct 7319251 TGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 7319295
Score = 163 bits (180), Expect = 1e-37
Identities = 135/165 (82%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94
|| |||||||| |||||||||||||||||| | || ||| |||||||| | || || ||
Sbjct 7338474 TCTACGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCCGTCCAAGGC 7338533
Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154
||||||| ||| |||||||||||||| ||||||| | || |||||||||||| ||||
Sbjct 7338534 TAAATATGGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGTAAAGATGAAAAGGACTT 7338593
Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
|| ||||||||| ||| || | ||||||||| | |||||||||
Sbjct 7338594 TGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 7338638
Score = 163 bits (180), Expect = 1e-37
Identities = 135/165 (82%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94
|| |||||||| |||||||||||||||||| | || ||| |||||||| | || || ||
Sbjct 7348242 TCTACGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCCGTCCAAGGC 7348301
Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154
||||||| ||| |||||||||||||| ||||||| | || |||||||||||| ||||
Sbjct 7348302 TAAATATGGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGTAAAGATGAAAAGGACTT 7348361
Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
|| ||||||||| ||| || | ||||||||| | |||||||||
Sbjct 7348362 TGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 7348406
Score = 154 bits (170), Expect = 6e-35
Identities = 134/165 (81%), Gaps = 1/165 (1%)
Strand=Plus/Plus
Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94
|| |||||||| |||||||||||||||||| | || ||| |||||||| | || || ||
Sbjct 7328697 TCTACGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCCGTCCAAGGC 7328756
Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154
||||||| ||| |||||||||||||| ||||||| | || |||||||||||| || |
Sbjct 7328757 TAAATATGGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGTAAAGATGAAAAGGAC-T 7328815
Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
|| ||||||||| ||| || | ||||||||| | |||||||||
Sbjct 7328816 TGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 7328860
Score = 147 bits (162), Expect = 9e-33
Identities = 133/165 (81%), Gaps = 2/165 (1%)
Strand=Plus/Plus
Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94
|| |||||||| |||||||||||||||||| | || ||| |||||||| | || | ||
Sbjct 7358012 TCTACGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCCGTCCAG-GC 7358070
Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154
||||||| ||| |||||||||||||| ||||||| | || ||||||| |||| ||||
Sbjct 7358071 TAAATATGGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGTAAAGATG-AAAGGACTT 7358129
Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
|| ||||||||| ||| || | ||||||||| | |||||||||
Sbjct 7358130 TGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 7358174
Score = 123 bits (136), Expect = 1e-25
Identities = 136/178 (76%), Gaps = 15/178 (8%)
Strand=Plus/Plus
Query 509 GGTGCACCATCGACCGATCCTGATGTCTTCGGA---TGGATTTGAGTAAGAGCATAGCTG 565
|||| ||| ||||||| | |||| |||| || ||| ||||||| |||||| |||
Sbjct 7229576 GGTGAACCGCCGACCGACCTTGAT--CTTCAGAGAATGG-TTTGAGTGTGAGCATGCCTG 7229632
Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625
|| ||| ||||||| |||||||||| | |||||||||||||||||| ||||
Sbjct 7229633 TTAGGA-----AAGATGG----CTATGCCTGAGTGCAGTGAAGCCAGAGGAAACTGTGGT 7229683
Query 626 GGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
|||||||||||||| | || | | ||||||| || ||| | ||||||||||||| ||
Sbjct 7229684 GGAGGCTCGCAGCGATAATGACATACAAATCGTTCATCAGAATTGGGTATAGGGGTGA 7229741
Score = 98.7 bits (108), Expect = 4e-18
Identities = 87/109 (80%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 575 GAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCG 634
|||||||||||| |||||||||| | | |||| |||| |||| ||||||||||| ||
Sbjct 7237000 GAAAGATGGTGAGCTATGCCTGAGTGCAGCGAAGACAGAATAAACCCTGGTGGAGGCCCG 7237059
Query 635 CAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
||||| | || | | |||||| |||||| | ||||||||||||| ||
Sbjct 7237060 CAGCGATAATGACATACAAATCATTCGTCAGAATTGGGTATAGGGGTGA 7237108
Score = 98.7 bits (108), Expect = 4e-18
Identities = 129/177 (73%), Gaps = 9/177 (5%)
Strand=Plus/Plus
Query 509 GGTGCACCATCGACCGATCCTGATGTCTTCGGAT--GGATTTGAGTAAGAGCATAGCTGT 566
|||||||| ||||||| | |||| |||| || || || |||| |||||| ||||
Sbjct 7285245 GGTGCACCGCCGACCGACCTTGAT--CTTCAGAGAAGGGTTCGAGTGTGAGCATGCCTGT 7285302
Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626
|||| |||||||||| || ||||||| | | |||| ||| |||||||||||
Sbjct 7285303 CGGGA-----AAGATGGTGAGCTTTGCCTGAGTGCAGCAAAGCTAGAATAAACTCTGGTG 7285357
Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
||||| ||||||| | || | | || | | |||||| | ||| ||||||||| ||
Sbjct 7285358 GAGGCCCGCAGCGATAATGACATACACGTTGTTCGTCAGAATTGAGTATAGGGGTGA 7285414
Score = 95.1 bits (104), Expect = 5e-17
Identities = 85/106 (80%), Gaps = 3/106 (3%)
Strand=Plus/Plus
Query 93 GCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCAC 152
||||||||| ||| |||||||||||||| ||||||| |||| ||| ||||||
Sbjct 7233131 GCTAAATATGGGCGAGAGACCGATAGCGAACAAGTATCGTGAGGTAAAAATGAAA---GA 7233187
Query 153 TTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGC 198
|||| ||||||||| ||| || | |||||||||||| ||||||||
Sbjct 7233188 TTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTTGAGAGGGAAGC 7233233
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079986314900
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