Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05]
638 sequences; 243,110,105 total letters
Query= AAMG01000811.1
Length=502
Score E
Sequences producing significant alignments: (Bits) Value
seq154 149 2e-33
>seq154
Length=17905225
Score = 149 bits (164), Expect = 2e-33
Identities = 140/177 (79%), Gaps = 1/177 (1%)
Strand=Plus/Plus
Query 321 CTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGA 380
|||||| ||||| |||||||||||||||||| | |||||||| |||| ||||||
Sbjct 6740126 CTTATGCCCTGGGCGACACACGTGCTACAATGGCCGGGACAAAGGGTCGCGATCCCGCGA 6740185
Query 381 GGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATA 440
|| ||| || ||| ||| || |||||||||||||| || |||||||||| || |
Sbjct 6740186 GGGTGAGCTAACTCCAAAAACCCGTCCTCAGTTCGGATTGCAGGCTGCAACTCGCCTGCA 6740245
Query 441 TGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTACGGTGAATACGTTCCCG 496
|||||| ||||||||||||||||| | |||| ||| | |||||||| ||||||||
Sbjct 6740246 TGAAGCCGGAATCGCTAGTAATCGCCGGTCAGCCATACGGCGGTGAATTCGTTCCCG 6740302
Score = 87.8 bits (96), Expect = 5e-15
Identities = 62/71 (87%), Gaps = 0/71 (0%)
Strand=Plus/Minus
Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60
|||| |||||| ||||||||||||| |||||||| | |||||||||||||||||||||
Sbjct 12347717 TACGTTCGCAAGAATGAAACTCAAAGGGATTGACGGAGGCCCGCACAAGCGGTGGAGCAT 12347658
Query 61 GTGGTTTAATT 71
|| ||| ||||
Sbjct 12347657 GTCGTTAAATT 12347647
Score = 82.4 bits (90), Expect = 2e-13
Identities = 59/68 (87%), Gaps = 0/68 (0%)
Strand=Plus/Minus
Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60
|||| |||||| |||||||| ||||||||||| ||| || ||||||||||||||||||
Sbjct 12369760 TACGTTCGCAAGAATGAAACTCTAAGGAATTGACAGGGGCCTGCACAAGCGGTGGAGCAT 12369701
Query 61 GTGGTTTA 68
|| |||||
Sbjct 12369700 GTAGTTTA 12369693
Score = 82.4 bits (90), Expect = 2e-13
Identities = 59/68 (87%), Gaps = 0/68 (0%)
Strand=Plus/Minus
Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60
|||| |||||| |||||||| ||||||||||| ||| || ||||||||||||||||||
Sbjct 12371819 TACGTTCGCAAGAATGAAACTCTAAGGAATTGACAGGGGCCTGCACAAGCGGTGGAGCAT 12371760
Query 61 GTGGTTTA 68
|| |||||
Sbjct 12371759 GTAGTTTA 12371752
Score = 82.4 bits (90), Expect = 2e-13
Identities = 59/68 (87%), Gaps = 0/68 (0%)
Strand=Plus/Minus
Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60
|||| |||||| |||||||| ||||||||||| ||| || ||||||||||||||||||
Sbjct 12373864 TACGTTCGCAAGAATGAAACTCTAAGGAATTGACAGGGGCCTGCACAAGCGGTGGAGCAT 12373805
Query 61 GTGGTTTA 68
|| |||||
Sbjct 12373804 GTAGTTTA 12373797
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1503990404480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |