Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq154 149 2e-33 >seq154 Length=17905225 Score = 149 bits (164), Expect = 2e-33 Identities = 140/177 (79%), Gaps = 1/177 (1%) Strand=Plus/Plus Query 321 CTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGA 380 |||||| ||||| |||||||||||||||||| | |||||||| |||| |||||| Sbjct 6740126 CTTATGCCCTGGGCGACACACGTGCTACAATGGCCGGGACAAAGGGTCGCGATCCCGCGA 6740185 Query 381 GGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATA 440 || ||| || ||| ||| || |||||||||||||| || |||||||||| || | Sbjct 6740186 GGGTGAGCTAACTCCAAAAACCCGTCCTCAGTTCGGATTGCAGGCTGCAACTCGCCTGCA 6740245 Query 441 TGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTACGGTGAATACGTTCCCG 496 |||||| ||||||||||||||||| | |||| ||| | |||||||| |||||||| Sbjct 6740246 TGAAGCCGGAATCGCTAGTAATCGCCGGTCAGCCATACGGCGGTGAATTCGTTCCCG 6740302 Score = 87.8 bits (96), Expect = 5e-15 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| ||||||||||||| |||||||| | ||||||||||||||||||||| Sbjct 12347717 TACGTTCGCAAGAATGAAACTCAAAGGGATTGACGGAGGCCCGCACAAGCGGTGGAGCAT 12347658 Query 61 GTGGTTTAATT 71 || ||| |||| Sbjct 12347657 GTCGTTAAATT 12347647 Score = 82.4 bits (90), Expect = 2e-13 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||| ||||||||||| ||| || |||||||||||||||||| Sbjct 12369760 TACGTTCGCAAGAATGAAACTCTAAGGAATTGACAGGGGCCTGCACAAGCGGTGGAGCAT 12369701 Query 61 GTGGTTTA 68 || ||||| Sbjct 12369700 GTAGTTTA 12369693 Score = 82.4 bits (90), Expect = 2e-13 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||| ||||||||||| ||| || |||||||||||||||||| Sbjct 12371819 TACGTTCGCAAGAATGAAACTCTAAGGAATTGACAGGGGCCTGCACAAGCGGTGGAGCAT 12371760 Query 61 GTGGTTTA 68 || ||||| Sbjct 12371759 GTAGTTTA 12371752 Score = 82.4 bits (90), Expect = 2e-13 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||| ||||||||||| ||| || |||||||||||||||||| Sbjct 12373864 TACGTTCGCAAGAATGAAACTCTAAGGAATTGACAGGGGCCTGCACAAGCGGTGGAGCAT 12373805 Query 61 GTGGTTTA 68 || ||||| Sbjct 12373804 GTAGTTTA 12373797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503990404480