Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq9 114 3e-23 seq52 100 6e-19 >seq9 Length=11574597 Score = 114 bits (126), Expect = 3e-23 Identities = 104/126 (83%), Gaps = 5/126 (4%) Strand=Plus/Plus Query 14 AGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATT 73 || ||||||| ||| ||||| |||| ||||||||||||| |||||||||||||| ||| Sbjct 3568089 AGCCCTTCTT-CACTCACGCAATATTG-CTGGATCAGGCTTGCGCCCATTGTCCAAGATT 3568146 Query 74 CCCCACTGCT--GCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATC 131 |||||||||| || ||| | ||||||||| || |||||||||||| ||||| || || Sbjct 3568147 CCCCACTGCTCCCCCCCCCTTGGGAGTCTGGGCCATGTCTCAGTTCCGGTGTGGCTTTTC 3568206 Query 132 -ATCCT 136 ||||| Sbjct 3568207 TATCCT 3568212 >seq52 Length=6559834 Score = 100 bits (110), Expect = 6e-19 Identities = 153/213 (72%), Gaps = 19/213 (9%) Strand=Plus/Plus Query 126 CTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAAC 185 |||||||||||||| |||||| ||| |||| |||||||||| ||| ||| |||||||| | Sbjct 5932451 CTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAGC 5932510 Query 186 TAGCTAATCCGAC-CTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTC 244 ||||||||| ||| | || | | || || ||| || ||| |||| | Sbjct 5932511 TAGCTAATCAGACGCGAGCCCCTCCT-----CG---GGC-----GGATTCCTCCTTTTGC 5932557 Query 245 CCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGC 302 | | | | || | ||||||||| |||||||| ||| | ||| || ||| ||| Sbjct 5932558 TCCTCAG-CCTACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGC 5932614 Query 303 AGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 || ||| || || ||||||||||||||||| || Sbjct 5932615 AGGTTCTTACGCGTTACTCACCCGTCCGCCACT 5932647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071993160640