Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq43 159 9e-37 >seq43 Length=7785828 Score = 159 bits (176), Expect = 9e-37 Identities = 207/279 (74%), Gaps = 8/279 (3%) Strand=Plus/Plus Query 145 AAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTTTGCCACTGAAAATAAG 202 |||||||||||| ||||||| |||| | ||| |||| || ||||||| || || Sbjct 5811735 AAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAA-CTAAGCCACTGCCTATGAG 5811792 Query 203 TCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGC-TCCCACTGCTT 261 |||| | | |||| | ||| ||| |||| |||| | | || | | ||||||||||| Sbjct 5811793 TCGCCGGCTCATTCTTCAACAGGCACGCGGTCAG--AGCCCAGGGCTCCTCCCACTGCTT 5811850 Query 262 GTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCC 321 | || ||| |||||| | ||||||||||||||| | |||||| ||||| || |||| Sbjct 5811851 GGGAGCTTACAGTTTCATGTTCTATTTCACTCCCCGATG-GGGGTTATTTTCACCCTTCC 5811909 Query 322 CTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCC 381 |||||||||||| ||| |||||||||| ||| ||||||||||||| | | |||||| Sbjct 5811910 CTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCTTACAAGCTGGTCCTT 5811969 Query 382 CCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 | ||||| || || | ||||| || | ||||||| Sbjct 5811970 GCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 5812008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241592078592