Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05]
638 sequences; 243,110,105 total letters
Query= AAMG01001432.1
Length=344
Score E
Sequences producing significant alignments: (Bits) Value
seq52 102 2e-19
seq9 80.6 5e-13
>seq52
Length=6559834
Score = 102 bits (112), Expect = 2e-19
Identities = 150/210 (71%), Gaps = 18/210 (9%)
Strand=Plus/Plus
Query 96 TCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACC 155
||| |||||| | || ||||| |||| ||| |||||| |||||| ||||||| ||| |
Sbjct 5932455 TCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAGCTAGC 5932514
Query 156 TAATCGGCCGCGAGCCCATCTTTCAGCG-ATAAATCTTTGGTCAAAGAATGATGCCATCC 214
||||| | ||||||||| || | ||| || || || ||| |||
Sbjct 5932515 TAATCAGACGCGAGCCCCTCCTCGGGCGGATTCCTCCTTT------------TGC--TCC 5932560
Query 215 TCTGACATTATGCGGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGT 274
|| | | || | ||||||||| |||||||| ||| |||| ||| || |||||||
Sbjct 5932561 TCAGCC--TACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGT 5932618
Query 275 TGCTCACGTGTTACTCACCCGTCCGCCACT 304
| || ||| |||||||||||||||||||||
Sbjct 5932619 T-CTTACGCGTTACTCACCCGTCCGCCACT 5932647
>seq9
Length=11574597
Score = 80.6 bits (88), Expect = 5e-13
Identities = 71/88 (81%), Gaps = 2/88 (2%)
Strand=Plus/Plus
Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCG--TAGGAGT 64
|||| |||||| || | |||||||| ||| || |||||||||| || ||| | |||||
Sbjct 3568114 GCTGGATCAGGCTTGCGCCCATTGTCCAAGATTCCCCACTGCTCCCCCCCCCTTGGGAGT 3568173
Query 65 CTGGGCCGTGTCTCAGTCCCAATGTGGC 92
||||||| ||||||||| || ||||||
Sbjct 3568174 CTGGGCCATGTCTCAGTTCCGGTGTGGC 3568201
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 998393630208
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |