Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq52 102 2e-19 seq9 80.6 5e-13 >seq52 Length=6559834 Score = 102 bits (112), Expect = 2e-19 Identities = 150/210 (71%), Gaps = 18/210 (9%) Strand=Plus/Plus Query 96 TCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACC 155 ||| |||||| | || ||||| |||| ||| |||||| |||||| ||||||| ||| | Sbjct 5932455 TCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAGCTAGC 5932514 Query 156 TAATCGGCCGCGAGCCCATCTTTCAGCG-ATAAATCTTTGGTCAAAGAATGATGCCATCC 214 ||||| | ||||||||| || | ||| || || || ||| ||| Sbjct 5932515 TAATCAGACGCGAGCCCCTCCTCGGGCGGATTCCTCCTTT------------TGC--TCC 5932560 Query 215 TCTGACATTATGCGGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGT 274 || | | || | ||||||||| |||||||| ||| |||| ||| || ||||||| Sbjct 5932561 TCAGCC--TACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGT 5932618 Query 275 TGCTCACGTGTTACTCACCCGTCCGCCACT 304 | || ||| ||||||||||||||||||||| Sbjct 5932619 T-CTTACGCGTTACTCACCCGTCCGCCACT 5932647 >seq9 Length=11574597 Score = 80.6 bits (88), Expect = 5e-13 Identities = 71/88 (81%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCG--TAGGAGT 64 |||| |||||| || | |||||||| ||| || |||||||||| || ||| | ||||| Sbjct 3568114 GCTGGATCAGGCTTGCGCCCATTGTCCAAGATTCCCCACTGCTCCCCCCCCCTTGGGAGT 3568173 Query 65 CTGGGCCGTGTCTCAGTCCCAATGTGGC 92 ||||||| ||||||||| || |||||| Sbjct 3568174 CTGGGCCATGTCTCAGTTCCGGTGTGGC 3568201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998393630208