Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq33 80.6 3e-13 >seq33 Length=9343251 Score = 80.6 bits (88), Expect = 3e-13 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 7317289 CCAACACAATAGGATCGAAA-TCCTATAATGTTATCCCATGCTAATGTATACAGAGCGTA 7317231 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 7317230 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 7317193 Score = 80.6 bits (88), Expect = 3e-13 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 7326858 CCAACACAATAGGATCGAAA-TCCTATAATGTTATCCCATGCTAATGTATACAGAGCGTA 7326800 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 7326799 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 7326762 Score = 80.6 bits (88), Expect = 3e-13 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 7336632 CCAACACAATAGGATCGAAA-TCCTATAATGTTATCCCATGCTAATGTATACAGAGCGTA 7336574 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 7336573 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 7336536 Score = 77.0 bits (84), Expect = 4e-12 Identities = 73/91 (80%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 7346405 CCAACACAATAGGATCGAAA-TCCTATAATGTTATCCCATGCTAATGTATACAGAGCGTA 7346347 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAG 102 || |||||||| ||||||||||| ||||| Sbjct 7346346 GGCTTGCTTTGAGCACTCTAATTTCTTCAAG 7346316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595196321292