Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05]
638 sequences; 243,110,105 total letters
Query= AAMG01002175.1
Length=414
Score E
Sequences producing significant alignments: (Bits) Value
seq9 118 3e-24
seq52 114 3e-23
>seq9
Length=11574597
Score = 118 bits (130), Expect = 3e-24
Identities = 102/124 (82%), Gaps = 3/124 (2%)
Strand=Plus/Plus
Query 17 AGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCC 76
|| ||||||||| ||||| || |||| |||||||||||||||||||| ||| |||||
Sbjct 3568089 AGCCCTTCTTCACTCACGCAATATTGCTGGATCAGGCTTGCGCCCATTGTCCAAGATTCC 3568148
Query 77 CCACTGCT--GCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTC-A 133
|||||||| || ||| | ||||||||| || |||||||||||| |||||||| || |
Sbjct 3568149 CCACTGCTCCCCCCCCCTTGGGAGTCTGGGCCATGTCTCAGTTCCGGTGTGGCTTTTCTA 3568208
Query 134 TCCT 137
||||
Sbjct 3568209 TCCT 3568212
>seq52
Length=6559834
Score = 114 bits (126), Expect = 3e-23
Identities = 199/288 (69%), Gaps = 30/288 (10%)
Strand=Plus/Plus
Query 127 CTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAAC 186
||| |||||||||| ||||||||| |||| |||||| ||| || ||| || | ||| |
Sbjct 5932451 CTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAGC 5932510
Query 187 TAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTC 246
||||||||| | | | | ||| || | || ||| ||| |||| ||
Sbjct 5932511 TAGCTAATCAGACGCGAGCCCCTCCTC--------GGGCGGAT--TCCTCCT-TTTGCTC 5932559
Query 247 TTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGT 306
| | | || | ||||||||| |||||||||| ||| | ||||||| |||||
Sbjct 5932560 CTCAGCC--TACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGG 5932617
Query 307 TTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTT 366
||| | | |||||||||||||||||||| ||| || || ||||
Sbjct 5932618 TTCTTACGCGTTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTC----- 5932661
Query 367 ACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414
|||| |||||||||||||||| || ||||||||||||||| |||||
Sbjct 5932662 -CCGTCCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 5932708
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1222392201088
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |