Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq9 118 3e-24 seq52 114 3e-23 >seq9 Length=11574597 Score = 118 bits (130), Expect = 3e-24 Identities = 102/124 (82%), Gaps = 3/124 (2%) Strand=Plus/Plus Query 17 AGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCC 76 || ||||||||| ||||| || |||| |||||||||||||||||||| ||| ||||| Sbjct 3568089 AGCCCTTCTTCACTCACGCAATATTGCTGGATCAGGCTTGCGCCCATTGTCCAAGATTCC 3568148 Query 77 CCACTGCT--GCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTC-A 133 |||||||| || ||| | ||||||||| || |||||||||||| |||||||| || | Sbjct 3568149 CCACTGCTCCCCCCCCCTTGGGAGTCTGGGCCATGTCTCAGTTCCGGTGTGGCTTTTCTA 3568208 Query 134 TCCT 137 |||| Sbjct 3568209 TCCT 3568212 >seq52 Length=6559834 Score = 114 bits (126), Expect = 3e-23 Identities = 199/288 (69%), Gaps = 30/288 (10%) Strand=Plus/Plus Query 127 CTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAAC 186 ||| |||||||||| ||||||||| |||| |||||| ||| || ||| || | ||| | Sbjct 5932451 CTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAGC 5932510 Query 187 TAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTC 246 ||||||||| | | | | ||| || | || ||| ||| |||| || Sbjct 5932511 TAGCTAATCAGACGCGAGCCCCTCCTC--------GGGCGGAT--TCCTCCT-TTTGCTC 5932559 Query 247 TTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGT 306 | | | || | ||||||||| |||||||||| ||| | ||||||| ||||| Sbjct 5932560 CTCAGCC--TACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGG 5932617 Query 307 TTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTT 366 ||| | | |||||||||||||||||||| ||| || || |||| Sbjct 5932618 TTCTTACGCGTTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTC----- 5932661 Query 367 ACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||| |||||||||||||||| || ||||||||||||||| ||||| Sbjct 5932662 -CCGTCCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 5932708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222392201088