Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq9 98.7 3e-18 seq52 84.2 7e-14 >seq9 Length=11574597 Score = 98.7 bits (108), Expect = 3e-18 Identities = 90/113 (80%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 235 GCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGC--AGCAGTGGGGAATAT 292 |||||| |||||||||||| || ||| ||||| | ||| || ||||||||||||| | Sbjct 3568201 GCCACACCGGAACTGAGACATGGCCCAGACTCCCAAGGGGGGGGGAGCAGTGGGGAATCT 3568142 Query 293 TGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCT 345 || ||||||||| ||||||||| |||||| ||||||| || ||||| || Sbjct 3568141 TGGACAATGGGCGCAAGCCTGATCCAGCAATATTGCGTGAGTGAAGAAGGGCT 3568089 >seq52 Length=6559834 Score = 84.2 bits (92), Expect = 7e-14 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 ||||||||||||||||| |||| ||| || |||||||||||||| |||||||||| | Sbjct 5932526 CGCGTCTGATTAGCTAGCTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 5932467 Query 220 CTGAGAGGGTGATC 233 | |||||| ||||| Sbjct 5932466 CCGAGAGGATGATC 5932453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497590445312