Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05]
638 sequences; 243,110,105 total letters
Query= AAMG01002180.1
Length=500
Score E
Sequences producing significant alignments: (Bits) Value
seq9 98.7 3e-18
seq52 84.2 7e-14
>seq9
Length=11574597
Score = 98.7 bits (108), Expect = 3e-18
Identities = 90/113 (80%), Gaps = 2/113 (2%)
Strand=Plus/Minus
Query 235 GCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGC--AGCAGTGGGGAATAT 292
|||||| |||||||||||| || ||| ||||| | ||| || ||||||||||||| |
Sbjct 3568201 GCCACACCGGAACTGAGACATGGCCCAGACTCCCAAGGGGGGGGGAGCAGTGGGGAATCT 3568142
Query 293 TGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCT 345
|| ||||||||| ||||||||| |||||| ||||||| || ||||| ||
Sbjct 3568141 TGGACAATGGGCGCAAGCCTGATCCAGCAATATTGCGTGAGTGAAGAAGGGCT 3568089
>seq52
Length=6559834
Score = 84.2 bits (92), Expect = 7e-14
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219
||||||||||||||||| |||| ||| || |||||||||||||| |||||||||| |
Sbjct 5932526 CGCGTCTGATTAGCTAGCTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 5932467
Query 220 CTGAGAGGGTGATC 233
| |||||| |||||
Sbjct 5932466 CCGAGAGGATGATC 5932453
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1497590445312
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |