Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq33 179 9e-43 seq226 82.4 2e-13 >seq33 Length=9343251 Score = 179 bits (198), Expect = 9e-43 Identities = 228/311 (73%), Gaps = 2/311 (1%) Strand=Plus/Minus Query 99 GGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAAC 158 ||||| || ||||||| || ||| | | |||||||||| || || | ||||| Sbjct 3637029 GGTGGCTTTTTAAGTCCACCGTCAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAAC 3636970 Query 159 TGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAG 218 | | ||| |||| | | ||||||| |||||| | ||| ||||||||||||||||| Sbjct 3636969 TACCAAGCTTGAGTACGGTAGGGGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAG 3636910 Query 219 ATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCT 278 | || | | |||||||| |||||| || |||||| | | |||||||||||| Sbjct 3636909 AGATCGGAAAGAACACCAACGGCGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGA 3636850 Query 279 CGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAA 338 ||||||| ||||||| || ||||||||||||| ||||||| ||||||||||||| | Sbjct 3636849 CGAAAGCTAGGGGAGCGAATGGGATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGA 3636790 Query 339 TACTAGGTGTCGGGGCGCAT-AAGTGCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCA 397 ||||||| | | | ||| || | | | |||| | ||| ||||| ||||||| || Sbjct 3636789 TACTAGGCG-CTGTGCGTATCGACCCGTGCAGTGCTGTAGCTAACGCCTTAAGTATCCCG 3636731 Query 398 CCTGGGGAGTA 408 ||||||||||| Sbjct 3636730 CCTGGGGAGTA 3636720 >seq226 Length=16133619 Score = 82.4 bits (90), Expect = 2e-13 Identities = 82/105 (78%), Gaps = 1/105 (1%) Strand=Plus/Minus Query 34 CAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGT 93 |||||||| ||||||||| ||| || ||||||||||||||| | ||||||| ||| || Sbjct 11083726 CAGCAGCCACGGTAATACAGAGGATGCAAGCGTTATCCGGAATGATTGGGCGT-AAGCGT 11083668 Query 94 GCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAAC 138 |||| ||| || ||||||| | | ||| | |||||||||| Sbjct 11083667 TTGTAGATGGCTTTTTAAGTCCGCCATCAAATCCCATGGCTCAAC 11083623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203192323584