Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05]
638 sequences; 243,110,105 total letters
Query= AAMG01002183.1
Length=408
Score E
Sequences producing significant alignments: (Bits) Value
seq33 179 9e-43
seq226 82.4 2e-13
>seq33
Length=9343251
Score = 179 bits (198), Expect = 9e-43
Identities = 228/311 (73%), Gaps = 2/311 (1%)
Strand=Plus/Minus
Query 99 GGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAAC 158
||||| || ||||||| || ||| | | |||||||||| || || | |||||
Sbjct 3637029 GGTGGCTTTTTAAGTCCACCGTCAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAAC 3636970
Query 159 TGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAG 218
| | ||| |||| | | ||||||| |||||| | ||| |||||||||||||||||
Sbjct 3636969 TACCAAGCTTGAGTACGGTAGGGGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAG 3636910
Query 219 ATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCT 278
| || | | |||||||| |||||| || |||||| | | ||||||||||||
Sbjct 3636909 AGATCGGAAAGAACACCAACGGCGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGA 3636850
Query 279 CGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAA 338
||||||| ||||||| || ||||||||||||| ||||||| ||||||||||||| |
Sbjct 3636849 CGAAAGCTAGGGGAGCGAATGGGATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGA 3636790
Query 339 TACTAGGTGTCGGGGCGCAT-AAGTGCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCA 397
||||||| | | | ||| || | | | |||| | ||| ||||| ||||||| ||
Sbjct 3636789 TACTAGGCG-CTGTGCGTATCGACCCGTGCAGTGCTGTAGCTAACGCCTTAAGTATCCCG 3636731
Query 398 CCTGGGGAGTA 408
|||||||||||
Sbjct 3636730 CCTGGGGAGTA 3636720
>seq226
Length=16133619
Score = 82.4 bits (90), Expect = 2e-13
Identities = 82/105 (78%), Gaps = 1/105 (1%)
Strand=Plus/Minus
Query 34 CAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGT 93
|||||||| ||||||||| ||| || ||||||||||||||| | ||||||| ||| ||
Sbjct 11083726 CAGCAGCCACGGTAATACAGAGGATGCAAGCGTTATCCGGAATGATTGGGCGT-AAGCGT 11083668
Query 94 GCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAAC 138
|||| ||| || ||||||| | | ||| | ||||||||||
Sbjct 11083667 TTGTAGATGGCTTTTTAAGTCCGCCATCAAATCCCATGGCTCAAC 11083623
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203192323584
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |