Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq365 196 4e-45 >seq365 Length=14695327 Score = 196 bits (216), Expect = 4e-45 Identities = 377/547 (69%), Gaps = 13/547 (2%) Strand=Plus/Plus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| ||||| || || || |||||||||| ||| || |||||| | || ||||| Sbjct 6185631 ATGTACAAGAAGGCCGAGGCATCGTTCTGGACGGCGGAAGAAGTCGATCTATCACAAGAC 6185690 Query 61156 ATGAATGACTGGGAGCGTTT-ATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGC 61214 ||||||||| | | | ||| ||| || | ||| ||||| ||||| || | || Sbjct 6185691 GGTCGCGACTGGGAGAATCTCAACGA-CGGCGAGCGACACTTCATCAAACACGTCCTCGC 6185749 Query 61215 GTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGA 61274 ||||| ||||| || ||||| |||||| |||||| | || ||| | || Sbjct 6185750 CTTCTTCGCCGCCTCAGACGGAATCGTCCTAGAGAATCTCGCTTCCCGATTCATGTCCGA 6185809 Query 61275 GGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCA 61334 || ||||| |||||||||||| ||||||||| |||||||| || || |||||| |||| Sbjct 6185810 TGTCCAAGTCTCGGAGGCGCGTGCTTTCTACGGTTTCCAGATCGCGATTGAGAATATCCA 6185869 Query 61335 CTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACG 61394 |||||||||||||||| | ||| |||| |||||||||| ||| || | || | Sbjct 6185870 CTCGGAGATGTACAGTCTCCTCCTCGACACGTACATCAAGGACAACAAAGAGAGAGACCA 6185929 Query 61395 ATTGTTCAATGCCATCGAGACGATACC-GGCG--GTGAAGCGGAAAGCGGATTGGGCCTT 61451 | ||| || ||||| || || || ||| | ||| |||||| | ||||| | Sbjct 6185930 TCTCTTCCGCGCAATCGAAACCATCCCTTGCGTCGCGAA---GAAAGCTCAGTGGGCGAT 6185986 Query 61452 CAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGT 61511 | |||||| | | | | || || | || ||| | | || || || || Sbjct 6185987 GACGTGGATCGACGG---ATCTCAGACTTTCGCAGAGCGAATCGTCGCTTTCGCCTGCGT 6186043 Query 61512 CGAGGGTGTATTTTTCAGTGG-ATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGAC 61570 ||| ||| | || ||| || | | | || | | || || ||| | ||||||||||| | Sbjct 6186044 CGAAGGTATCTTCTTCTCCGGTAGCTTCTG-CTCGATTTTCTGGCTTAAGAAACGTGGTC 6186102 Query 61571 TTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTG 61630 | ||||| || | |||||| ||| |||||||| || || ||||| ||| | || || | Sbjct 6186103 TCATGCCTGGATTAACCTTCTCCAACGAGTTGATCTCTCGAGACGAAGGCTTACACTGCG 6186162 Query 61631 ATTTTGC 61637 |||| || Sbjct 6186163 ATTTCGC 6186169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397564908660320