Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq35027 113 3e-23 seq11880 109 3e-22 seq7918 107 1e-21 seq3167 107 1e-21 seq15876 105 4e-21 seq12195 104 1e-20 seq22161 91.5 8e-17 seq32174 82.4 4e-14 >seq35027 Length=5377 Score = 113 bits (124), Expect = 3e-23 Identities = 95/117 (81%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| |||||||||||| ||||||||||| | ||| | |||||| || Sbjct 3699 GAACCCAAAAACTTTGATTTCTTGTAAGGTGCCGGCGGTGTCCTTGTAGCAACATCCGCC 3640 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||| | |||||||| ||||| |||| |||||| |||||||||||||| ||||||| Sbjct 3639 GATCCTTTGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCATCTTCGA 3583 >seq11880 Length=18295 Score = 109 bits (120), Expect = 3e-22 Identities = 95/117 (81%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||| ||||| |||||||||| | ||| | | ||||| || Sbjct 8759 GAACCCAAAAACTTTGAATTCTCATAAGGTGCCGGCGGTGTCCTTAGCA--ACATCCGCC 8702 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || |||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 8701 GAACCCTTGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 8645 >seq7918 Length=24972 Score = 107 bits (118), Expect = 1e-21 Identities = 94/117 (80%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||| ||||| |||||||||| | ||| | |||||| || Sbjct 2267 GAACCCAAAAACTTTGAATTCTCATAAGGTGCCGGCGGTGTCCTTGTAGCAACATCCGCC 2208 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 | |||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 2207 AAACCCTGGTCGGCATTGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 2151 >seq3167 Length=41999 Score = 107 bits (118), Expect = 1e-21 Identities = 94/117 (80%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||||| | || | ||||| Sbjct 29646 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGTATCCTTGTAGCAACATTCGTT 29705 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 29706 GATCCCTAGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 29762 >seq15876 Length=25779 Score = 105 bits (116), Expect = 4e-21 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61 |||||||| ||||||||||||| |||||| ||| | ||| | |||||| ||| Sbjct 23723 AACCCAAAAACTTTGATTTCTCATAAGGTACCGGCAGTGTCCTTGTAGCAACATCCGCCG 23782 Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||| |||||||| ||||| |||| |||||| || ||||| ||||||||||||| Sbjct 23783 ATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGATGGTATTTGATCGTCTTCGA 23838 >seq12195 Length=26436 Score = 104 bits (114), Expect = 1e-20 Identities = 92/115 (80%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||||| | ||| | |||||| || Sbjct 22632 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGTGGTGTCCTTGTAGCAACATCCGCC 22573 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115 ||| ||| |||||||| ||||| |||| |||||| |||| ||||| ||||||||| Sbjct 22572 GATTCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGATATCTAATCGTCTTC 22518 >seq22161 Length=9464 Score = 91.5 bits (100), Expect = 8e-17 Identities = 92/119 (77%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGC-- 58 ||||||||| ||||| |||| || |||||||||| | ||| | ||||| Sbjct 6808 GAACCCAAAAACTTTTATTTGTCATAAGGTGCCGGCGGTGTCCTTGTAGCAACATTTTTG 6867 Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||| |||||||| ||||| |||| |||| | |||||||||| ||||||||||| Sbjct 6868 CCGATCCCTGGTCGGCATCGTTTATGGTTGAGACAATGACGGTATCTAATCGTCTTCGA 6926 >seq32174 Length=6157 Score = 82.4 bits (90), Expect = 4e-14 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61 |||||||| |||||||||||||||||||||||| | ||| | |||||| ||| Sbjct 6065 AACCCAAAAACTTTGATTTCTCGTAAGGTGCCGGCGGTGTCCTTGTAGCAACATCCGCCG 6124 Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTA 94 |||| | |||||||| ||||| |||| |||||| Sbjct 6125 ATCCTTTGTCGGCATCGTTTATGGTTGAGACTA 6157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 277388379660