Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq22161 239 8e-61 seq12195 215 9e-54 seq3167 194 3e-47 seq16230 192 1e-46 seq35027 179 7e-43 seq15876 168 1e-39 seq47658 156 8e-36 seq33883 87.8 3e-15 seq26097 84.2 4e-14 seq4587 84.2 4e-14 >seq22161 Length=9464 Score = 239 bits (264), Expect = 8e-61 Identities = 203/245 (83%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133 |||||||||| ||||||||||||||||||||||||| |||| | |||||||||||||| Sbjct 7169 TTACTTTGAAGAAATTAGAGTGTTCAAAGCAGGCCTAAGCTCTGTATACATTAGCATGGG 7110 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 || | | |||||| | |||| ||||| ||||| || | ||| || || |||||||| Sbjct 7109 ATTACATTATAGGAT-TCCGGTCCTATTGTGTTGTCTT-TGGGATCGGAGTCATGATTAA 7052 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253 ||||||||||||||| | ||||| || |||||||||||||||||||||||||| | Sbjct 7051 CAGGGATAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAA 6992 Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 |||| ||| | ||||||||| || |||||||||||||||||||||| ||||||||||| Sbjct 6991 AGACGAACAAATGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTT 6933 Query 314 AGGGG 318 |||| Sbjct 6932 GGGGG 6928 >seq12195 Length=26436 Score = 215 bits (238), Expect = 9e-54 Identities = 218/280 (78%), Gaps = 3/280 (1%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 || |||| ||||| || | || | |||| || |||||||||| ||||||| ||| || Sbjct 22237 TGGCCTTAACTGGCTGGGTCGTGCCTCCAGCGCTGTTACTTTGAAGAAATTAGGGTGCTC 22296 Query 100 AAAGCAGGCCTTTGCTC-GAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCT 158 |||| |||||| | | | ||| |||||||||| |||| | |||||| | |||| || Sbjct 22297 AAAGTAGGCCTAAGTTTTGTATAGATTAGCATGGGATAACATTATAGGAT-TCCGGTCCT 22355 Query 159 ATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTAT 218 ||| |||||| | ||| || ||||||||||| | ||||||||||||| | |||| Sbjct 22356 ATTGTGTTGGCCTTCGGGATCGGAGTAATGATTAACATGGATAGTCGGGGGCATTCGTAT 22415 Query 219 TCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCA 278 | || |||||||||||||||||||||||||| ||||| ||| ||||| ||||| || Sbjct 22416 TTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCAAAAGCATTTG 22475 Query 279 CCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 |||||||| ||||||||||||| |||| |||||| |||| Sbjct 22476 CCAAGGATTTTTTCATTAATCA-AGAACAAAAGTTGGGGG 22514 >seq3167 Length=41999 Score = 194 bits (214), Expect = 3e-47 Identities = 194/248 (78%), Gaps = 3/248 (1%) Strand=Plus/Minus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGA-ATACATTAGCAT 130 || |||||||||| ||||||||||| ||||||||||||| || |||||||||||| Sbjct 30009 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAGGCCTAATCTTTTTATACATTAGCAT 29950 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | ||||| | |||| ||||| |||||| | ||| || ||| |||| Sbjct 29949 GGGATAACATTTTAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGAGTACTGAT 29891 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| | ||| | ||||||| | |||| | |||||||||||||||||||||||||| Sbjct 29890 TAACAAGGACATTCGGGGGCATTCATATTTCGTAGTCAGAGGTGAAATTCTTGGATTTAT 29831 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| ||| | ||||||||| || ||||||| |||||||||||||| |||||||| Sbjct 29830 GAAAGACAAACAATTGCGAAAGCATTTGCCAAGGAAGTTTTCATTAATCA-AGAACGAAA 29772 Query 311 GTTAGGGG 318 ||| |||| Sbjct 29771 GTTGGGGG 29764 >seq16230 Length=13717 Score = 192 bits (212), Expect = 1e-46 Identities = 192/245 (78%), Gaps = 3/245 (1%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133 ||||||| || ||||| ||||| ||||||||||||| |||| ||| |||||| | || Sbjct 7053 TTACTTTAAAGAAATTTGAGTGCTCAAAGCAGGCCTAAGCTCTGAACTCATTAGTAAGGG 7112 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 |||| | |||| | | |||| ||||| |||||| | | | || ||||||||||| Sbjct 7113 ATAACATTATAGTAT-TCCGGTCCTATTGTGTTGGCCTTCGGTATCGGAGTAATGATTAA 7171 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253 ||||||||||||||| | |||| || |||| ||||||||||||||||||||| | Sbjct 7172 CAGGGATAGTCGGGGGCATTCATATTTCATAGTCAAAGGTGAAATTCTTGGATTTATGAA 7231 Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 |||| ||| | || |||||| || | |||||||||||||||||||| ||||||||||| Sbjct 7232 AGACGAACAAATGTGAAAGCATTTGCGAAGGATGTTTTCATTAATCA-AGAACGAAAGTT 7290 Query 314 AGGGG 318 |||| Sbjct 7291 GGGGG 7295 >seq35027 Length=5377 Score = 179 bits (198), Expect = 7e-43 Identities = 191/248 (77%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| || |||||||| | ||| | |||||||||||| Sbjct 3336 CTGTTACTTTGAAGAAATTAGAGTGCTCTAAGCAGGCATAAGCTTTGTATACATTAGCAT 3395 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | || || | |||| ||||| |||||| | ||| || ||||| | Sbjct 3396 GGGATAACATTATTAGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGAGTAATAGT 3454 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||||||||| | ||||||| | ||||| || ||||||||||||||||||||||| || Sbjct 3455 TAATAGGGACAATCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTCAT 3514 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 || || ||| |||| |||||| || ||||||| ||||||||||| | ||| |||| Sbjct 3515 GAAAAACGAACAACTGGGAAAGCATTTGCCAAGGAGTTTTTCATTAATTA-AGAATGAAA 3573 Query 311 GTTAGGGG 318 ||| |||| Sbjct 3574 GTTGGGGG 3581 >seq15876 Length=25779 Score = 168 bits (186), Expect = 1e-39 Identities = 185/242 (76%), Gaps = 3/242 (1%) Strand=Plus/Minus Query 76 TACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGAA 134 ||||||||| |||||||||| ||||| || ||| |||| | |||||||| ||||| | Sbjct 24081 TACTTTGAAGAAATTAGAGTCCTCAAAACACACCTAAGCTCTGTATACATTAACATGGGA 24022 Query 135 TAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAAT 194 ||| | |||||| | |||| ||||| |||||| | | | || ||||||||||| Sbjct 24021 TAACATTATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGTATCGGAGTAATGATTAAC 23963 Query 195 AGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAA 254 | | | ||||||||| | ||||| | || |||||||||||| |||||||||| || Sbjct 23962 AAGCACAGTCGGGGGCATTTGTATTTCGTAGTAAGAGGTGAAATTTTTGGATTTATGAAA 23903 Query 255 GACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTA 314 || || ||||| ||||| || |||||||||||||||||||||| |||| |||||| Sbjct 23902 GAAGAAATACTGTAAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACAAAAGTTG 23844 Query 315 GG 316 || Sbjct 23843 GG 23842 >seq47658 Length=3143 Score = 156 bits (172), Expect = 8e-36 Identities = 175/230 (76%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| ||| |||| || || | | | || ||||||||| Sbjct 2448 CTGTTACTTTGAAGAAATTAGAGTGCTCAGAGCAAGCATTAGATTTGTATTCATTAGCAT 2389 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | |||||| | |||| ||| | ||| | | ||| | |||||||| Sbjct 2388 GGGATAACATTATAGGAT-TCCGGTCCTACTGTGTAAGCCTTCGGGATCAGAGTAATGAT 2330 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| | ||| ||||||||| | |||| || |||| | |||||||||||||||| | Sbjct 2329 TAACAAGGACAGTCGGGGGCATTCATATTTCATAGTCA-ACATGAAATTCTTGGATTTTT 2271 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCA 300 ||||| ||| ||||||||||| || |||||||||||||||||||||| Sbjct 2270 GAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA 2221 >seq33883 Length=5694 Score = 87.8 bits (96), Expect = 3e-15 Identities = 101/136 (74%), Gaps = 5/136 (4%) Strand=Plus/Minus Query 152 CGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTG 211 |||| ||||| |||||| | ||| || ||||||||||| |||| ||||||||| Sbjct 161 CGGTCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGATTAACAGGGGCAGTCGGGGGCA 102 Query 212 TCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAA 271 | ||||| || || ||||||||||||||||||| ||||| ||| |||| ||| Sbjct 101 TTCGTATTTCATAGT-----GTGAAATTCTTGGATTTATGAAAGACGAACAACTGTAAAA 47 Query 272 GCGTTCACCAAGGATG 287 || || |||||| || Sbjct 46 GCATTTGCCAAGGGTG 31 >seq26097 Length=8131 Score = 84.2 bits (92), Expect = 4e-14 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 222 ATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCA 281 || |||||||||||||||||||||||||| ||||| ||| ||||||||||| || ||| Sbjct 8127 ATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCA 8068 Query 282 AGGATG 287 |||||| Sbjct 8067 AGGATG 8062 >seq4587 Length=35126 Score = 84.2 bits (92), Expect = 4e-14 Identities = 62/71 (87%), Gaps = 1/71 (1%) Strand=Plus/Minus Query 240 CTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATC 299 ||||||||||| ||||| ||| ||||||||||| || ||||||||||||||||||||| Sbjct 12965 CTTGGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATC 12906 Query 300 AGTGAACGAAA 310 | |||||||| Sbjct 12905 A-AGAACGAAA 12896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 911652739712