Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq27105 113 6e-23 seq12556 100 4e-19 seq1412 100 4e-19 seq15567 77.0 4e-12 seq5293 77.0 4e-12 seq15 73.4 5e-11 >seq27105 Length=8078 Score = 113 bits (124), Expect = 6e-23 Identities = 89/107 (83%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCC 201 |||||||||||||||||||||||||| ||||||||||| |||||| || |||| | | Sbjct 15 GCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTC 74 Query 202 GAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | |||| |||||| |||||| || ||||||||||||||| |||| Sbjct 75 AAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGTA 121 Score = 87.8 bits (96), Expect = 2e-15 Identities = 74/90 (82%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | || Sbjct 7927 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACC-ACTTAGCAGAGTCC 7985 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCT 95 |||||||||| |||||||||||| ||| || Sbjct 7986 TGTGTTTTTAATAAACAGTCGCTACCCCCT 8015 >seq12556 Length=17404 Score = 100 bits (110), Expect = 4e-19 Identities = 166/236 (70%), Gaps = 14/236 (6%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||||| ||| ||||| | ||||||||| ||||| ||| || | | Sbjct 4033 CCTTCCAGCACCGGGTAGGTGTCAGGCTCTATACATCGTGTTACCA-CTTATCAAAGTCT 3975 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 |||||||||| |||| ||||||| ||| ||| | | | ||| | | |||| | Sbjct 3974 TGTGTTTTTAATAAATAGTCGCTACCC-CTAGTATGT---ACCGCTTTCCAATCAAAAGA 3919 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || | || ||||||||||||||||||| || ||||||||||| ||||| Sbjct 3918 TA-------AGAGAT--CAACCCTTCTCCCGAAGTTACGCGGTCATTTTGCCGATTTCCT 3868 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241 | || |||| | | | ||| |||||| || ||| || |||||| ||||||| Sbjct 3867 TCGACATGGTTCTCTCAAGTGCCCTAGTATACTATACTTGCTCACCTGCGTCGGTT 3812 >seq1412 Length=115766 Score = 100 bits (110), Expect = 4e-19 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||||||||||||||||| |||||||| | ||||||| | ||| | Sbjct 63868 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCAAGTTCCTTAGAGAGAGTCGTCT 63927 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || | ||| |||||||||| || |||||||||||||||| |||| Sbjct 63928 CGCGCCCCTAGGTATTCTCTATCTACCCACCTGTGTCGGTTTCGGGTA 63975 >seq15567 Length=14350 Score = 77.0 bits (84), Expect = 4e-12 Identities = 67/82 (82%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | |||| || ||| || |||| Sbjct 6401 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTA-CGACTTTGCGAAGACC 6459 Query 66 TGTGTTTTTAGTAAACAGTCGC 87 ||||||||| |||||||||||| Sbjct 6460 TGTGTTTTTGGTAAACAGTCGC 6481 >seq5293 Length=36742 Score = 77.0 bits (84), Expect = 4e-12 Identities = 67/82 (82%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | |||| || ||| || |||| Sbjct 36234 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTA-CGACTTTGCGGAGACC 36176 Query 66 TGTGTTTTTAGTAAACAGTCGC 87 ||||||||| |||||||||||| Sbjct 36175 TGTGTTTTTGGTAAACAGTCGC 36154 >seq15 Length=252635 Score = 73.4 bits (80), Expect = 5e-11 Identities = 43/45 (96%), Gaps = 0/45 (0%) Strand=Plus/Minus Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTT 186 |||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 35793 GCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTT 35749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691792655162