Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq1412 224 2e-56 seq12556 170 5e-40 seq4959 149 2e-33 seq74 127 5e-27 seq27105 91.5 4e-16 seq2332 84.2 5e-14 seq3745 78.8 2e-12 seq5293 77.0 8e-12 seq15567 73.4 1e-10 >seq1412 Length=115766 Score = 224 bits (248), Expect = 2e-56 Identities = 298/418 (71%), Gaps = 27/418 (6%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||| ||| | |||| ||| |||||| Sbjct 63563 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCAATACAGTGCCCAGATCGTT 63622 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| |||| || | ||||||||||||||||||||||||| |||||||||||||||||| Sbjct 63623 ACGCCTTTCGGGCGGATCGGAACTTACCCGACAAGGAATTTTGCTACCTTAGGACCGTTA 63682 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCC 188 | ||||||||||||||| |||||||||||| || |||| | | | || | ||| Sbjct 63683 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCAGCTCCCCTGTCATCAGGTCACCG 63742 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | || |||||||||||| ||||||||||| ||| || | | ||| || ||| Sbjct 63743 ACTTTCTTGACCTTCCGGCACTAGGCAGGCGTCAACCCCCATGCATGGTCTTACGACTTT 63802 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308 || || ||||| |||| |||||||||| |||||||| |||||||| Sbjct 63803 GCGGAAACCTGTGATTTTGGTAAACAGTCGTCCGGGCCTGGTCACTTCGACC------CC 63856 Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368 ||| ||| | ||| | ||||||||||||||||||| || || Sbjct 63857 CTTTGTGAGGA-----------------GGCACCCCTTCTCCCGAAGTTACGGGGCTATT 63899 Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 ||||| |||||||| |||| |||| || ||| ||||||||||| | | |||| Sbjct 63900 TTGCCAAGTTCCTTAGAGAGAGTCGTCTCGCGCCCCTAGGTATTCTCTATCTACCCAC 63957 >seq12556 Length=17404 Score = 170 bits (188), Expect = 5e-40 Identities = 289/415 (70%), Gaps = 29/415 (7%) Strand=Plus/Minus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGT-GGAGACAGCGCCGC 65 ||| | |||||||||| | || || |||||||| | || || || |||||||||| || Sbjct 4219 TACTCCGCATCTTCACGGAGAATTTAATTTCACCGGGT-TCATGTCGGAGACAGCGGGGC 4161 Query 66 CATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGG 125 ||||||| ||||||||||||||| ||||| | |||| |||||| ||||||||||| Sbjct 4160 AGTCGTTACACCATTCGTGCAGGTCACTACTTATGCAACAATGAATTTTGCTACCTTAGG 4101 Query 126 ACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAA 185 || | | ||||| ||||||||||||||||||||| || | ||||| ||| Sbjct 4100 ACAATGAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTT--------ATAA 4049 Query 186 CCCCATCAATT--AACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCG 243 | | | || ||||||| |||||||| ||| |||| | |||||| || || | Sbjct 4048 CACTTTTCCTTCCGACCTTCCAGCACCGGGTAGGTGTCAGGCTCTATACATCGTGTTACC 3989 Query 244 TGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGC 303 || || ||| ||||||||||||||| |||||| | ||| |||| | ||| Sbjct 3988 ACTTATCAAAGTCTTGTGTTTTTAATAAATAGTCGCTAC-CCCTAGTATGT---ACC--- 3936 Query 304 ATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTG 363 |||| | | ||| | ||| | |||||||||||||||||| | Sbjct 3935 ----GCTTTCCAATCAAAAGATAAGAGATCAAC------CCTTCTCCCGAAGTTACGCGG 3886 Query 364 CCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTAC 418 | ||||||| | ||||||| | ||||||||||| ||| | |||| || ||| Sbjct 3885 TCATTTTGCCGATTTCCTTCGACATGGTTCTCTCAAGTGCCCTAGTATACTATAC 3831 >seq4959 Length=33700 Score = 149 bits (164), Expect = 2e-33 Identities = 159/210 (76%), Gaps = 10/210 (5%) Strand=Plus/Plus Query 68 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 127 ||||||| |||||||||||||||| ||||| ||||||||||||| ||||||||||||| Sbjct 19261 TCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTTGCTACCTTAGGAC 19320 Query 128 CGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACC 187 |||| |||| | | |||||||| |||||||| || | ||||| |||| Sbjct 19321 AGTTAGAGTTATTGTCTCCGTTTACTGGGGCTTCCATTCAAAGCTT--------ATAACA 19372 Query 188 CCATCAATT--AACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTG 245 | | || ||||||| |||||||| ||| |||| || |||||| || || | Sbjct 19373 CTTTTCCTTCCGACCTTCCTGCACCGGGAAGGTGTCAGACTCTATACATCGTGTTACCAC 19432 Query 246 TTTGCAGAGTGCTGTGTTTTTAATAAACAG 275 || ||||||| ||||||||||||||||||| Sbjct 19433 TTAGCAGAGTCCTGTGTTTTTAATAAACAG 19462 >seq74 Length=283862 Score = 127 bits (140), Expect = 5e-27 Identities = 161/224 (72%), Gaps = 22/224 (10%) Strand=Plus/Plus Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||||||| ||||||| ||||| |||||||||||||||||||||||||||| || | Sbjct 150859 ATCGTTACGCCTTTCGTGCGGGTCGAAACTTACCCGACAAGGAATTTCGCTACCCTAAAA 150918 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186 || |||| ||||||| |||| |||| | | | | |||| | || Sbjct 150919 CCATTATAGTTACGGTCGCC---------GGCTCC---------CCTGTCATTAGGTTAC 150960 Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 246 | | || |||||||||||| || ||| ||||| |||| |||| | ||| || Sbjct 150961 CAACTTCCTTGACCTTCCGGCACTGGACAGACGTCAAACCCCATACATAGTCTTACGACA 151020 Query 247 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGT 290 ||||| || |||||||||| ||||||||| | |||||||| Sbjct 151021 TTGCAAAGACCTGTGTTTTTGATAAACAGTTG----GGCCTGGT 151060 >seq27105 Length=8078 Score = 91.5 bits (100), Expect = 4e-16 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 198 ACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGC 257 ||||||| |||||||||||| |||| || |||||| || || | || ||||||| | Sbjct 7926 ACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGTCC 7985 Query 258 TGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTAT 292 |||||||||||||||||||||| | |||||||| Sbjct 7986 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTAT 8020 Score = 84.2 bits (92), Expect = 5e-14 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 343 CCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCG 402 ||||||||||||||||||| | | ||||||| ||||||||| | ||||||||||||| Sbjct 20 CCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAGCG 79 Query 403 CCTTGGTATTCTCTAC 418 || | |||| |||||| Sbjct 80 CCCTAGTATACTCTAC 95 >seq2332 Length=67448 Score = 84.2 bits (92), Expect = 5e-14 Identities = 94/126 (75%), Gaps = 10/126 (8%) Strand=Plus/Plus Query 105 AAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGAT 164 || |||||||||||||||||||| |||| ||||| |||||||||||| |||||||| || Sbjct 32287 AAAGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACTGGGGCTTCCAT 32346 Query 165 CAAGAGCTTCGCGTTAGCTAACCCCATCAATT--AACCTTCCGGCACCGGGCAGGCGTCA 222 | ||||| |||| | | || ||||||| |||||||||||| |||| Sbjct 32347 TCAAAGCTT--------ATAACACTTTTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCA 32398 Query 223 CACCCT 228 || || Sbjct 32399 GACTCT 32404 >seq3745 Length=38895 Score = 78.8 bits (86), Expect = 2e-12 Identities = 90/121 (74%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 ||||||||| || || | ||||||| ||| ||| ||||||| ||| | ||| Sbjct 17043 GCATCTTCATAGACATGTGTATTTCACCGAGCCTCTTCCCGAGACAGTGCCCATGTTGTT 17102 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||| || |||||||||||||||| || |||||| | ||||||| || |||| Sbjct 17103 ACGCCTTTCATGTGGGTCGGAACTTACCCGGGAAAGAATTTTGTTACCTTATGATTGTTA 17162 Query 133 T 133 | Sbjct 17163 T 17163 >seq5293 Length=36742 Score = 77.0 bits (84), Expect = 8e-12 Identities = 66/82 (80%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 198 ACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGC 257 |||||||||||| |||||||||||| ||| |||| | ||| || ||||| ||| | Sbjct 36235 ACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAGACC 36176 Query 258 TGTGTTTTTAATAAACAGTCGC 279 ||||||||| ||||||||||| Sbjct 36175 TGTGTTTTTGGTAAACAGTCGC 36154 >seq15567 Length=14350 Score = 73.4 bits (80), Expect = 1e-10 Identities = 67/85 (79%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 195 TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAG 254 || |||||||||||| |||||||||||| ||| |||| | ||| || ||||| || Sbjct 6397 TTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGAAG 6456 Query 255 TGCTGTGTTTTTAATAAACAGTCGC 279 |||||||||| ||||||||||| Sbjct 6457 ACCTGTGTTTTTGGTAAACAGTCGC 6481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1255913214848