Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= AAMG01000750.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value seq11701 71.6 6e-11 seq7918 71.6 6e-11 seq4116 71.6 6e-11 seq3167 71.6 6e-11 >seq11701 Length=18544 Score = 71.6 bits (78), Expect = 6e-11 Identities = 68/85 (80%), Gaps = 3/85 (4%) Strand=Plus/Minus Query 2 GAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC-G 60 ||||||||||| || ||||||||| |||||||||||| |||| |||||||| | ||| Sbjct 13444 GAAAAGAAACTTACAAGGATTCCCCTAGTAACGGCGAGCGAACTGGGAAGAGTCGAGCAT 13385 Query 61 CCGAATC--CCCGCCCCGCGGTGGG 83 ||||| | |||||||||| || Sbjct 13384 TAGAATCGGGCGGCCCCGCGGTCGG 13360 >seq7918 Length=24972 Score = 71.6 bits (78), Expect = 6e-11 Identities = 51/59 (86%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 59 |||||||||||| || ||||||||| ||||||||||| |||| || ||||||||||| Sbjct 19756 GGAAAAGAAACTTACAAGGATTCCCCTAGTAACGGCGAACGAACTGGAAAGAGCCCAGC 19814 >seq4116 Length=56372 Score = 71.6 bits (78), Expect = 6e-11 Identities = 50/57 (88%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCA 57 |||||||||||| || ||||||||| |||||| ||||||||| |||||||||||| Sbjct 55516 GGAAAAGAAACTTACAAGGATTCCCCTAGTAACAACGAGTGAACCGGGAAGAGCCCA 55572 >seq3167 Length=41999 Score = 71.6 bits (78), Expect = 6e-11 Identities = 50/57 (88%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCA 57 |||||| ||||| || ||||||||| |||||||||||| |||| |||||||||||| Sbjct 6686 GGAAAATAAACTTACAAGGATTCCCCTAGTAACGGCGAGCGAACCGGGAAGAGCCCA 6630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 229562796960