Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq189388 179 8e-43 seq22879 111 3e-22 seq369 91.5 3e-16 seq20428 80.6 6e-13 seq2837 78.8 2e-12 seq2212 77.0 7e-12 seq7437 75.2 2e-11 >seq189388 Length=17252 Score = 179 bits (198), Expect = 8e-43 Identities = 142/168 (85%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 17 CCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCC 76 ||||||| ||| |||||| |||| ||||||| |||||||||||||||||||| |||||| Sbjct 166 CCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCC 109 Query 77 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCT 136 |||||||||| ||||| |||||| || |||||||||||| |||||||| |||||||||| Sbjct 108 CACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCG 49 Query 137 CTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAA 184 ||||||| || | ||| | | |||||| |||| |||||| ||||| Sbjct 48 AAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGACCAA 1 >seq22879 Length=9061 Score = 111 bits (122), Expect = 3e-22 Identities = 72/79 (91%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 76 CCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCC 135 ||||||||||||||||||||||||||| |||| ||||||| |||||||| |||||||||| Sbjct 4874 CCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTATCTCAGTCCCAGTGTGGCTGATCATCC 4815 Query 136 TCTCAGACCAGTTACGGAT 154 |||| |||||| ||| ||| Sbjct 4814 TCTCGGACCAGCTACTGAT 4796 >seq369 Length=91026 Score = 91.5 bits (100), Expect = 3e-16 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 65 TCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTG 124 ||||| |||||||||||||||| || || |||||| || ||||||||||| |||||||| Sbjct 60073 TCCAAGATTCCCCACTGCTGCCCCCTGTGGGAGTCCGGGTCGTGTCTCAGTCCCAGTGTG 60132 Query 125 ACTGATCATCCTCTCAGACCAGTTA 149 |||||||||| ||||||| || Sbjct 60133 GCTGATCATCCGAAAAGACCAGCTA 60157 >seq20428 Length=10514 Score = 80.6 bits (88), Expect = 6e-13 Identities = 81/103 (79%), Gaps = 2/103 (2%) Strand=Plus/Plus Query 63 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 122 ||||||| |||||||||| ||||| | || |||||| || ||||||||||| |||||| Sbjct 3126 TGTCCAAGATTCCCCACTACTGCC-CTTGTGGGAGTCCGGGACGTGTCTCAGTCCCAGTG 3184 Query 123 TGACTGATCATCCTCTCAGACCAGTTACGGATC-GTCGCCTTG 164 ||| ||||||||| |||||| || | ||| |||| ||| Sbjct 3185 TGAATGATCATCCAAAAAGACCACCTATGTATCATTCGCTTTG 3227 >seq2837 Length=53573 Score = 78.8 bits (86), Expect = 2e-12 Identities = 61/70 (87%), Gaps = 2/70 (3%) Strand=Plus/Plus Query 17 CCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCC 76 ||||||| ||| ||| || |||| ||||||| ||||||||||||||| |||| |||||| Sbjct 7699 CCTTCTT-CACTCACACGATATTG-CTGGATCGGGCTTTCGCCCATTGCCCAAGATTCCC 7756 Query 77 CACTGCTGCC 86 |||||||||| Sbjct 7757 CACTGCTGCC 7766 >seq2212 Length=49406 Score = 77.0 bits (84), Expect = 7e-12 Identities = 65/79 (82%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 60 CATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 119 ||||| || |||||||||| | ||||||| ||||||||||| ||||||||||| | | Sbjct 18457 CATTGCGAAAAATTCCCCACTACGGCCTCCCATAGGAGTCTGGGTCGTGTCTCAGTCCTA 18398 Query 120 GTGTGACTGATCAT-CCTC 137 ||||| ||||||| |||| Sbjct 18397 GTGTGGATGATCATACCTC 18379 >seq7437 Length=26159 Score = 75.2 bits (82), Expect = 2e-11 Identities = 59/68 (87%), Gaps = 2/68 (3%) Strand=Plus/Plus Query 17 CCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCC 76 ||||||| ||| |||||| |||| |||||| ||||||| |||||||||||| |||||| Sbjct 8757 CCTTCTT-CACTCACGCGATATTGT-TGGATCGGGCTTTCACCCATTGTCCAAGATTCCC 8814 Query 77 CACTGCTG 84 |||||||| Sbjct 8815 CACTGCTG 8822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1067844992320