Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq17544 156 2e-35 seq7495 125 3e-26 seq17050 107 7e-21 seq21122 89.7 2e-15 seq49242 78.8 3e-12 seq37145 77.0 1e-11 >seq17544 Length=35148 Score = 156 bits (172), Expect = 2e-35 Identities = 356/524 (68%), Gaps = 44/524 (8%) Strand=Plus/Minus Query 85 TGTGGGCC-CCCTAGACCATCCAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCAC 143 || ||||| |||||| |||| ||||||||||||| || | ||| ||||| || Sbjct 18020 TGGGGGCCACCCTAGCCCATTGAGTGCTCTACCTCGGGCCATCGACATCATACGCTCTAC 17961 Query 144 CTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATC 203 |||| |||||| ||| |||||||||| | | ||| ||||||||||||||||| | Sbjct 17960 TGAAATAGATTTCGCGGAAAACCAGCTATATCCGATCTTGGTTGGCCTTTCACCCCTAGC 17901 Query 204 CACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTA-CC 262 |||| ||||||||| | ||| | || || ||||||||||||||||| | | ||| Sbjct 17900 CACAAGTCATCCCCGTATTTTGCCACATACGTGGGTTCGGTCCTCCAAGGCCTGTTAGAG 17841 Query 263 CGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCAT 322 | | ||||||||||| ||||| |||||| | | |||||||| || | | | Sbjct 17840 CTCTCTTCAACCTGCTCATGGCTAGATCGATCGGTTTCGGGTC-AAATAGGAAGAACTAG 17782 Query 323 ACGCCCTATTCGGACTCGCTTTCGCTA-CGGCTACCCCACACGGGTTAA-CCTCGCGACA 380 | | |||| || || | | | || |||| || | || |||| || | | Sbjct 17781 AAG----ATTC-CAC---CTCTGGAAAGCGCCTACACCTAATGGCTTAAGCCGCTGTTCC 17730 Query 381 CAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCA-CCTG-GTAC------C 432 || | ||||| | | ||| | ||||||| ||||||| | || || | | Sbjct 17729 CATTTC---CTCGCTGACCCATCATGCAAAAGGTACGCCGTTAGAGTGAGTGCGCTTTAC 17673 Query 433 TA--------------AAAGGCACTTCAGCTC---CGACGGATTGTAGGCACATGGTTTC 475 || |||||| | | ||||| |||| |||||| ||| | | || Sbjct 17672 TAATAGAATGAAAAGTAAAGGCTC-TAAGCTCCTTCGACTGATTGTTCGCATCGGATCTC 17614 Query 476 AGGT--ACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTC 533 |||| ||||| ||||||| |||| |||||||||||||||||||||||||||| Sbjct 17613 AGGTTCTCTATTGCACTCCCTAAATAGGGTTCTTTTCACCTTTCCCTCACGGTACTTGTA 17554 Query 534 CGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCC 577 |||||||||||| |||| || ||||||||| |||||||||| Sbjct 17553 CGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGGGTGGTCCC 17510 >seq7495 Length=38676 Score = 125 bits (138), Expect = 3e-26 Identities = 129/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 6196 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 6137 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||| | |||| | || | | |||||| | | | ||||||| ||||||| || Sbjct 6136 CCCTAACCAAAACTCATTCGCTTATTCTTCAACATCAATCGGTTCGGACCTCCACTTAGT 6077 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC 305 | | || |||||| |||| ||||||||| |||| | | |||||||| Sbjct 6076 TTCAACCAAGCTTCATCCTGGTCATGGATAGTTCACCTAGGTTCGGGTC 6028 >seq17050 Length=12982 Score = 107 bits (118), Expect = 7e-21 Identities = 118/157 (75%), Gaps = 9/157 (6%) Strand=Plus/Minus Query 391 TCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTC 450 |||| |||||||||||||| |||||||| |||| | || | || | ||| Sbjct 2551 TCGCCGGCTCATTCTTCAACAGGCACGCGGTCA----GAGCCCTATGTGCTC-----CTC 2501 Query 451 CGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTC 510 | || | ||| || | ||||||| || ||||||||||||||| ||||| |||||| Sbjct 2500 CCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATGGGGGTTCTTTTC 2441 Query 511 ACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACC 547 ||| ||||||||||||||| | |||||||||||||| Sbjct 2440 ACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACC 2404 >seq21122 Length=18695 Score = 89.7 bits (98), Expect = 2e-15 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 470 GGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACT 529 ||||||| | |||||| |||||| | |||||| ||||||||| ||| ||||||||||| Sbjct 1981 GGTTTCATATTCTATTTTACTCCCGGATAGGGGTTCTTTTCACCCTTCTCTCACGGTACT 2040 Query 530 TGTCCGCTATCGGTCACCAAGGAGTAT 556 | | |||||||||||| |||||||| Sbjct 2041 ACTTCACTATCGGTCACCTAGGAGTAT 2067 >seq49242 Length=2631 Score = 78.8 bits (86), Expect = 3e-12 Identities = 70/88 (80%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 160 GAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTC 219 || |||||||||| | || ||| ||||||||||||||||| ||||| ||||||| Sbjct 1883 GAAAACCAGCTATATCCAATCTTGGTTGGCCTTTCACCCCTAGCCACAAGTCATCCTAGT 1942 Query 220 AGTTTTCAACCTAAGTGGGTTCGGTCCT 247 | ||| | || || |||||||||||||| Sbjct 1943 ATTTTGCCACATATGTGGGTTCGGTCCT 1970 >seq37145 Length=4690 Score = 77.0 bits (84), Expect = 1e-11 Identities = 72/92 (78%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 185 TTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGT 244 ||||| ||||||||||| ||||| |||||| || | | |||||| | ||| ||||||| Sbjct 1830 TTGGCATTTCACCCCTAACCACAACTCATCCGCTGATTCTTCAACATTAGTCGGTTCGGA 1771 Query 245 CCTCCACGCGGTCTTACCCGCGCTTCAACCTG 276 ||||||| || | |||| |||||| |||| Sbjct 1770 CCTCCACTTAGTTTCACCCAAGCTTCATCCTG 1739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1810555091456